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54-1314-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27052136 [Map]; Strand: c
      • AT1G71870.1 - [+] show detail - MATE efflux family protein
        Distance: -17241; Region: intergenic
      • AT1G71880.1 - [+] show detail - sucrose-proton symporter 1
        Distance: -2044; Region: intergenic
    Flanking Genome Sequence: 54-1314-1 - 5-prime edge 
    TATGTATAGT AANACTATCA TATTAAAAAA ACATTTTGCC CAAAAATAAA 
    TAAAAATAAT CATATTAAAA AAAGATTATT AGTGTTTATA GTAGACACAA 
    AGAANAAGAA GCTATTCTTC ACATAAGAAA AGAAAAGCAA CGTATATTTC 
    GAGGGNGACT TTCTCTCTAT TTTCGTTTGG TTTTTTTGAA TGCCTTTCGG 
    AAAACAAATC AATATTAGTG TAACCACAGA ATAA

AT1G71870.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G29140.1); Has 10234 Blast hits to 10086 proteins in 1918 species: Archae - 185; Bacteria - 7350; Metazoa - 148; Fungi - 328; Plants - 1302; Viruses - 0; Other Eukaryotes - 921 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G71880.1

Model type
Protein coding
Short Description
sucrose-proton symporter 1
Curator Summary
Sucrose transporter gene induced in response to nematodes; member of Sucrose-proton symporter family.
Computational Description
sucrose-proton symporter 1 (SUC1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: pollen germination, response to nematode; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G71890.1); Has 2274 Blast hits to 2182 proteins in 558 species: Archae - 37; Bacteria - 864; Metazoa - 396; Fungi - 188; Plants - 414; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).
Link
InterPro Scan - TAIR