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54-1315-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26602889 [Map]; Strand: w
      • AT1G70550.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: 2670; Region: intergenic
      • AT1G70560.1 - [+] show detail - tryptophan aminotransferase of Arabidopsis 1
        Distance: -1966; Region: intergenic
    Flanking Genome Sequence: 54-1315-1 - 5-prime edge 
    CTCTCACGTC CACCCACTTT TGTTTCTTGG AAAGAGTCGA TCAAATTTCA 
    TAGTTGTTAA TATGATTTCG ATGGACTAAT ATCCTCCATA TCGAGGGTAT 
    GAATAGAGAT AGTGTTCAAA TAGGTCCATC TAGGAAAATG ATATGTGATG 
    ATGAAGTGCT ATGGGGATGG AGAATTAATT GTTTAAATTG AATGGCTTGT 
    GACTTCATCA TTTCCTCCAA TCTCCTACGC TTTCCAACTT GGTGGTCTCA 
    GTACTCTTTT TATTAATTTA AAAGAAATTC CACTACGTTG TTAAATGTTA 
    ATGTTGATGG TTTTTCATGG AAAAATATCC CAACTGCCGA TGAATTGATT 
    TATATTCAAA TGACACGCCA TCAAAACAAT TGTATCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26602774 [Map]; Strand: w
      • AT1G70550.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: 2555; Region: intergenic
      • AT1G70560.1 - [+] show detail - tryptophan aminotransferase of Arabidopsis 1
        Distance: -2081; Region: intergenic
    Flanking Genome Sequence: 54-1315-1 - 3-prime edge 
    GCGTGGGAGT NGNTCTATCC AATTANGTAT CCGTCTAAGC TGAACTAAAT 
    ATTGTTTTAN GTNNGGACGA TTCANNTCGT TGATCCNTAA TCAATTAATC 
    ATACTAGTTC CGGGGACCAA GTATTGATAT ATACGCACAA AGAGTCAAAG 
    AGTCCCGCTC AATGATNACT ATGCNTCCAA TGATAATCTT TTGATATATA 
    CACCATTTTA TATTTTCTCA AAACAAATCA TCTTATGGTT GTGTTTTTGC 
    TCTCTACAAA ACAATTAATG CGTATCTATA AATCGAACAC AATATAATGT 
    CTTAATATAT TAAAACTTTA GTATNATC

AT1G70550.1

Model type
Protein coding
Short Description
Protein of Unknown Function (DUF239)
Computational Description
Protein of Unknown Function (DUF239); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 775 Blast hits to 727 proteins in 29 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 10; Plants - 752; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G70560.1

Model type
Protein coding
Short Description
tryptophan aminotransferase of Arabidopsis 1
Curator Summary
TAA1 is involved in the shade-induced production of indole-3-pyruvate (IPA), a precursor to IAA, a biologically active auxin. It is also involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. This enzyme can catalyze the formation of IPA from L-tryptophan. Though L-Trp is expected to be the preferred substrate in vivo, TAA1 also acts as an aminotransferase using L-Phe, L-Tyr, L-Leu, L-Ala, L-Met, and L-Gln.
Computational Description
tryptophan aminotransferase of Arabidopsis 1 (TAA1); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Allinase, C-terminal (InterPro:IPR006948), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: tryptophan aminotransferase related 1 (TAIR:AT1G23320.1); Has 469 Blast hits to 469 proteins in 134 species: Archae - 44; Bacteria - 178; Metazoa - 0; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Link
InterPro Scan - TAIR