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54-1320-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 183434 [Map]; Strand: w
      • AT2G01420.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: -106; Region: promoter
      • AT2G01420.2 - [+] show detail - Auxin efflux carrier family protein
        Distance: -106; Region: promoter
      • AT2G01422.1 - [+] show detail
        Distance: -506; Region: promoter
      • AT2G01422.2 - [+] show detail
        Distance: -506; Region: promoter
    Flanking Genome Sequence: 54-1320-3 - 5-prime edge
    GTTTTTGAGG CAGTGACAGT GTCATCATCA TCATCAGCAC ACGATTACGT 
    TTTTTAAGTT TGATTAATAA TTTGATTTAA AATGGCTTTG TGTGTAGTTG
    AGTGGGGACA CGTGGCAAAT CGCATGTGGG GGGAGTTTTC TGGAGGGACG
    TGNACAGTTT TATGGAATAG TCGTGCTTTT TTGCTACTAT CTTATTACGA
    AAAAGTGGTC TTGTTTTTGC ACTTTTTGAA AGTTGCAAAA GGAACTTTGG
    CGAATACTAC GAATTACTGT ATCTGTGATC GTTTTTCTTG TAAATGTAAT
    TTGAGTTTTG ATTCCAAATA GAATCAAACT ATTGTCTACG TACTTGGT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 183318 [Map]; Strand: w
      • AT2G01420.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01420.2 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01422.1 - [+] show detail
        Distance: -622; Region: promoter
      • AT2G01422.2 - [+] show detail
        Distance: -622; Region: promoter
    Flanking Genome Sequence: 54-1320-3 - 3-prime edge
    TCAANAACCT CTATAAATTA GTCCTCTTCA CCGAATCCTT GTAAATCATT 
    ACTGTACTTT TCTCTCTTAA CGGTTTCTTT ATTATTCTTC CCATTCTACC
    CCTTTTCTTC CTTCTAATTC CCCCTCAAAT GCCACTGTCT TCTCACTAAA
    CTCCAAAACC CACCGGAAAA AATGATTACG TGGCACGACT TGTACACCGT
    CCTCACCGCC GTGGTACCAC TTTACGTAGC TATGATTCTC GCCTACGGAT
    CCGTACAGTG GTGGAAGATA TTCTCACCAG ACCAGTGCTC CGGCATCAAC
    CGCTTCGTCG CTATCTTCGC CGTCCCTCTC CTCTCCTTCC ACTTCATCTC
    CACCAACGAT CCTTACGCCA TGAATTTCCG CTTCGTCGCC GCCGACACGC
    TTCAA

AT2G01420.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).
Computational Description
PIN-FORMED 4 (PIN4); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: root development, pattern specification process, auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1811 Blast hits to 1602 proteins in 498 species: Archae - 31; Bacteria - 1046; Metazoa - 12; Fungi - 10; Plants - 485; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01420.2

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).
Computational Description
PIN-FORMED 4 (PIN4); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: root development, pattern specification process, auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1823 Blast hits to 1616 proteins in 502 species: Archae - 31; Bacteria - 1046; Metazoa - 18; Fungi - 10; Plants - 487; Viruses - 2; Other Eukaryotes - 229 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01422.1

Model type
Other RNA
Link
InterPro Scan - TAIR

AT2G01422.2

Model type
Other RNA
Link
InterPro Scan - TAIR