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Mutant Lines
54-1322-1

54-1322-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 18729160 [Map]; Strand: w
- AT1G50570.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
  Distance: -871; Region: promoter
- AT1G50575.1 - [+] show detail - Putative lysine decarboxylase family protein
  Distance: 0; Region: exon4 (CDS)

CCGGCAATGC AGATCCAATC CTTTCGAGCT GAATCAATGC CAAAATCTCA 
AACATCTCAT CGAGCGTGCC AATGCCACCT GGAAGTGCAA TTATCGCCGT 
CTTCTCAGAT ACATTGTTTC TAATCACAGN ATCTACTAAT CCATGCTTTC 
TCGCCGAGAA AAACCTAACA TGGATTTCGC ATTTTAGGGA TCACTCATTC 
TTGTGCAAGC NCAGTAAGTA ATAACCAATG GTGTGTGGCT ATGTTNACCT 
GCGAGTNTGG TAATTCTGAG GAGGGAGATA TGGATGAAAC TAGGGGCGGT 
CNGTTNAAAA ACTTTTTTTT NTATTTTGAN GCCNCCNANC TGTTTTTNNT 
GTCCCANCAN GGGGGGTCCT NCTTAAANAA NCCCTGGNCA ANAANAAAAN 
ANNAAGGGNG GNCCNNCAAN AANGNNGGTG NGNNANTACA AAAGNGGGGG 
AGNNGAAAAC AAACNNNCCA AANANTTTTT TTNNAAACNA CTTGGGGGGG 
GGGGGNGGNG GNNNTTNTTT CNTNGGAAAA NNATTGGGGG GGGANAAAAA 
AAAAAAAAAA NGGGGGGGGN ANTGNNTNGG GNNAAAAAAA AAAAAAAANG 
GGNNNNNNNN TTT

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 18729040 [Map]; Strand: w
  - AT1G50570.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
    Distance: -751; Region: promoter
  - AT1G50570.2 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
    Distance: -963; Region: promoter
  - AT1G50575.1 - [+] show detail - Putative lysine decarboxylase family protein
    Distance: 0; Region: exon4 (CDS)
Flanking Genome Sequence: 54-1322-1 - 3-prime edge
```
TAGGTTCGGT TCATTGTGAT GAATTATGAT GCTTTCTATT CAAAGCTGCT 
TGAATTCATN GAGACTTGTG AAAACTTGGG AACTGTTTCT AAAGGAGAAG 
TTTCTGCACT GTGGAAGGTA TGCAACAACA ACTTTGAAGC TTTGACATAC 
TTAGCTGAAT TCTATGACTT GCCTGNTGGT TCTGCAAAGC TGGAAACTGA 
ACTTAGAAAA ACCACTCCCA CTCGTGGATG ATGAGTTTCG TAATTTTTAA 
CTGTAAGAGA TCATATTTTT GACCATGAGC AACCAATTTG AAGCTACTCA 
TGTGGCACAT GTAGCATATA GATTCGTGTG TTTGATACAT ACACCAATCA 
GATTTGTTGT TATCACTTTC AATCTTATGT TTCTTCTCTT AGCTTCTCGT 
GTTATCCTTC TAC
```

AT1G50570.1

Model type: Protein coding
Short Description: Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description: Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G55530.2); Has 225 Blast hits to 222 proteins in 54 species: Archae - 0; Bacteria - 19; Metazoa - 23; Fungi - 31; Plants - 136; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G50570.2

Model type: Protein coding
Short Description: Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description: Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G55530.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G50575.1

Model type: Protein coding
Short Description: Putative lysine decarboxylase family protein
Computational Description: Putative lysine decarboxylase family protein; FUNCTIONS IN: carboxy-lyase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); Has 3310 Blast hits to 3310 proteins in 987 species: Archae - 6; Bacteria - 2367; Metazoa - 4; Fungi - 47; Plants - 208; Viruses - 0; Other Eukaryotes - 678 (source: NCBI BLink).
Link: InterPro Scan - TAIR