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54-1322-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18729160 [Map]; Strand: w
      • AT1G50570.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: -871; Region: promoter
      • AT1G50575.1 - [+] show detail - Putative lysine decarboxylase family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-1322-1 - 5-prime edge
    CCGGCAATGC AGATCCAATC CTTTCGAGCT GAATCAATGC CAAAATCTCA 
    AACATCTCAT CGAGCGTGCC AATGCCACCT GGAAGTGCAA TTATCGCCGT
    CTTCTCAGAT ACATTGTTTC TAATCACAGN ATCTACTAAT CCATGCTTTC
    TCGCCGAGAA AAACCTAACA TGGATTTCGC ATTTTAGGGA TCACTCATTC
    TTGTGCAAGC NCAGTAAGTA ATAACCAATG GTGTGTGGCT ATGTTNACCT
    GCGAGTNTGG TAATTCTGAG GAGGGAGATA TGGATGAAAC TAGGGGCGGT
    CNGTTNAAAA ACTTTTTTTT NTATTTTGAN GCCNCCNANC TGTTTTTNNT
    GTCCCANCAN GGGGGGTCCT NCTTAAANAA NCCCTGGNCA ANAANAAAAN
    ANNAAGGGNG GNCCNNCAAN AANGNNGGTG NGNNANTACA AAAGNGGGGG
    AGNNGAAAAC AAACNNNCCA AANANTTTTT TTNNAAACNA CTTGGGGGGG
    GGGGGNGGNG GNNNTTNTTT CNTNGGAAAA NNATTGGGGG GGGANAAAAA
    AAAAAAAAAA NGGGGGGGGN ANTGNNTNGG GNNAAAAAAA AAAAAAAANG
    GGNNNNNNNN TTT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18729040 [Map]; Strand: w
      • AT1G50570.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: -751; Region: promoter
      • AT1G50570.2 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: -963; Region: promoter
      • AT1G50575.1 - [+] show detail - Putative lysine decarboxylase family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-1322-1 - 3-prime edge
    TAGGTTCGGT TCATTGTGAT GAATTATGAT GCTTTCTATT CAAAGCTGCT 
    TGAATTCATN GAGACTTGTG AAAACTTGGG AACTGTTTCT AAAGGAGAAG
    TTTCTGCACT GTGGAAGGTA TGCAACAACA ACTTTGAAGC TTTGACATAC
    TTAGCTGAAT TCTATGACTT GCCTGNTGGT TCTGCAAAGC TGGAAACTGA
    ACTTAGAAAA ACCACTCCCA CTCGTGGATG ATGAGTTTCG TAATTTTTAA
    CTGTAAGAGA TCATATTTTT GACCATGAGC AACCAATTTG AAGCTACTCA
    TGTGGCACAT GTAGCATATA GATTCGTGTG TTTGATACAT ACACCAATCA
    GATTTGTTGT TATCACTTTC AATCTTATGT TTCTTCTCTT AGCTTCTCGT
    GTTATCCTTC TAC

AT1G50570.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G55530.2); Has 225 Blast hits to 222 proteins in 54 species: Archae - 0; Bacteria - 19; Metazoa - 23; Fungi - 31; Plants - 136; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G50570.2

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G55530.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G50575.1

Model type
Protein coding
Short Description
Putative lysine decarboxylase family protein
Computational Description
Putative lysine decarboxylase family protein; FUNCTIONS IN: carboxy-lyase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); Has 3310 Blast hits to 3310 proteins in 987 species: Archae - 6; Bacteria - 2367; Metazoa - 4; Fungi - 47; Plants - 208; Viruses - 0; Other Eukaryotes - 678 (source: NCBI BLink).
Link
InterPro Scan - TAIR