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54-1326-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5069701 [Map]; Strand: w
      • AT5G15580.1 - [+] show detail - longifolia1
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-1326-1 - 5-prime edge 
    TTTNNAAATG CNCTTNCACN ACGGGTAAAA ATAACAAAAN CGGTTATACG 
    ATAACGGTCG GTACGGGATT TTCCCATCCT ACTTTCATCC CGTAATGTCG 
    CTGTTCCTCT CATAGTTATA CCTGCTTGTA ACCTCAGTAT CAAGGTTAGA 
    GGCCAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18773517 [Map]; Strand: c
      • AT2G45540.2 - [+] show detail - WD-40 repeat family protein / beige-related
        Distance: -686; Region: promoter
    Flanking Genome Sequence: 54-1326-1 - 3-prime edge 
    GTTTTAGATG ATTTTGTTTG TATTTNNNTG CACAAGGGTT TGAGCAATTG 
    AAACAAACAG AGGAAAGTAT TGCAATGGCT AATTAATGGT CTGTTTCTTT 
    ACGGGAATGG CATATAACGT GTTGGTCCTG TGTAATGTGA TACCAAAGGT 
    CTCGTCCATA TCCAAGTCCT CTGAAACGAC ACCGTTAGGA AGCTTCCAGT 
    CAAAGGAATA AAGAAGAGAA GCAAGCATAA GAGACACTGT TTTCACAGCC 
    AAAGGCAATC CCGGACATAT TCTCCGTCCT CCTCCAAACG GTGTAAGCTC 
    ATAATCTCTA CCTTTCACAT CAATATCTTT CCCCATAAAC CTCTCTGGCT 
    CGAACTGGCT CGGATTCTCC CATACGCTTG GGTCTCGTCC TATGGCCCAC 
    ACATTCA

AT2G45540.2

Model type
Protein coding
Short Description
WD-40 repeat family protein / beige-related
Computational Description
WD-40 repeat family protein / beige-related; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), Beige/BEACH (InterPro:IPR000409), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60920.1).
Link
InterPro Scan - TAIR

AT5G15580.1

Model type
Protein coding
Short Description
longifolia1
Curator Summary
Encodes LONGIFOLIA1 (LNG1). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG1 homologue LNG2 (At3g02170) has similar function.
Computational Description
LONGIFOLIA1 (LNG1); BEST Arabidopsis thaliana protein match is: longifolia2 (TAIR:AT3G02170.1); Has 1694 Blast hits to 1037 proteins in 207 species: Archae - 0; Bacteria - 111; Metazoa - 481; Fungi - 158; Plants - 217; Viruses - 11; Other Eukaryotes - 716 (source: NCBI BLink).
Link
InterPro Scan - TAIR