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54-1341-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15953669 [Map]; Strand: w
      • AT4G33070.1 - [+] show detail - Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-1341-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC TGAGCCTGAA GCATCAGCTA GCTCAACAAA 
    GGCATCACAA GCTTTAGCCA CACGCAACTT AGGACCACCA ACCATAACTG 
    GCTTCACAGC CTTATTCAGA AACTCCAATG TTGCTTCCAC CGCAGCTTCT 
    AAACCCATCT TGTTGCTCAA TCTGATAAAA CCATTTGTGA GTTTTAATTC 
    TCGCAGAAAC AGAGTATTGA TCAGAGTTCA AGTATAAATT ACCTTGGAGC 
    TAGAGAAAAA GGGACAGGAT CACGGCTAAA TGTATGATGA GGAATCGCTG 
    CTAAGTTACA GCTTACACTT ATATACACAG GCTTGCTCTC TTTCAAAGCT 
    GTTGATATTG CTTTATCAAT CTGTTCATGA GCATCATCTA AATTGTTCAC 
    CACCGNCTGA GAAACAAAAC CAGAACCNAA ATCATTCATA ATCCGACGCT 
    ATTAATCTTC AAATATTTCT ATTANATNAC CANCCNGGGC GGNNACACGC 
    GGNNCCTTNN NNNNNNGNGG NGGNATTNNN NNNGGGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15953627 [Map]; Strand: w
      • AT4G33070.1 - [+] show detail - Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-1341-1 - 3-prime edge 
    TAATCAGGCT NTGCTTTGGC GATGATGCCT TCTGCGAAAG GCTTTGTACC 
    AGAGCACCAT CCTCATTTCA TTGGAACTTA TTGGGGAGCA GTGAGCACTC 
    CTTTTTGCTC TGAGATTGTG GAATCTGCGG ATGCTTACAT TTTTGCAGGT 
    CCAATCTTCA ACGACTATAG CTCTGTTGGT TACTCGCTTC TCCTCAAGAA 
    AGAAAAAGCC ATCGTTGTGC AACCTGATCG TATCACTGTG GCCAATGGTC 
    CTACTTTTGG TTGCATTTTG ATGAGCGATT TCTTCAGGGA ATTGTCTAAG 
    ANGGTGAAGC GTAACNAGAC TGCATATGAG AACTACCATA NGATCTTTGT 
    CCCTGAAGGT AAGCCATTGA AGTGTGAA

AT4G33070.1

Model type
Protein coding
Short Description
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
Computational Description
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein; FUNCTIONS IN: in 6 functions; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: TPP-binding enzyme, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Pyruvate decarboxylase/indolepyruvate decarboxylase (InterPro:IPR012110), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT5G01320.1); Has 20589 Blast hits to 20526 proteins in 2548 species: Archae - 428; Bacteria - 13367; Metazoa - 177; Fungi - 761; Plants - 551; Viruses - 4; Other Eukaryotes - 5301 (source: NCBI BLink).
Link
InterPro Scan - TAIR