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Mutant Lines
54-1373-1

54-1373-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 16152475 [Map]; Strand: c
  - AT1G43005.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
    Distance: 235; Region: intergenic
  - AT1G43010.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: -1134; Region: intergenic
Flanking Genome Sequence: 54-1373-1 - 5-prime edge
```
CGGGACNAAC TGACAAAATC GGTTATACGA TAACGGTCGG TACGGGAATT 
TTCCCATCCT ACTTTCATCC CACTTATAAC CACTCTAATC TTATCCTACG 
GAGTAATGTA TTTACACAAA GAATAGCATA CTATACGATG TAACCAATTC 
TGTTAATTCC AGGAATCATA ACCAAACAAA TAAGAGAAAT AGTAACTTTC 
AAAAATATCA TTAAAATACG AAACAAAAAC ATTAAGGCAG AGACAAAGAT 
CATGTTGATA GTTCTATATC GAACCCAAGA AGTAAAATCT TACATAAGAA 
GATCCCTTTA CATAAGCT
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 26455775 [Map]; Strand: w
- AT5G66200.1 - [+] show detail - armadillo repeat only 2
  Distance: 0; Region: exon1 (5UTR)

CGTCCGTCGT CGACCCATCT TCTTCTCTCC AATGGAGTCT CCTCTTCTTC 
TTCTTCTTTT CTCTTTCTTA TTATTTCCGA TCCAGTCAAT TTCTCGGCTT 
CCGTAAAACC CAGTTGACAA GAAAAATAAG AAAGCTTTAT CCTTTTTACC 
CTAATTCCTC AAAGTTTAGT CCTTTCTCTT TCGGGTTTCT GAATCTCGAT 
TCGCCATTTG ATCTGATATC GACGATGGCA GACATCGTCA AGCAAATCCT 
AGCGAAGCCG ATTCAACTGT CTGACCAGGT GGTCAAAGCC GCCGATGAGG 
CTAGTTCCTT CAAGCAAGAG TGCGGCGAAC TCAAGGCTAA GACCGAGAAG 
CTCGCCGGTC TTCTCCGTCA GGCTGCCCGC GCCAGCAACG ACCTTTACGA 
GCGAC

AT1G43005.1

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G61060.1); Has 259 Blast hits to 220 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G43010.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G28020.1); Has 605 Blast hits to 542 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 603; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G66200.1

Model type: Protein coding
Short Description: armadillo repeat only 2
Curator Summary: Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules.
Computational Description: armadillo repeat only 2 (ARO2); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo repeat only 1 (TAIR:AT4G34940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR