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54-1416-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9118006 [Map]; Strand: c
      • AT3G25020.1 - [+] show detail - receptor like protein 42
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1416-1 - 5-prime edge 
    TTNCNACGGG AAAAACTAAC AAAATCGGTT ATACGATAAC GGTCGGTACG 
    GGATTTTCCN ATCCTACTTT NATNCNTGGG TNNCGNNNCG NGCACCACGN 
    ACAGCCCTAN ANNTCCGAGC GCGGATTAGC ATCCCNGGCC GTNAACCANC 
    NCNTGCNCTA TGAAGTATTC CTGACAAGTA TTATGTGGAT ACGCCTCTAC 
    GATCATTCGA CGTTGGTTAC AATCGATTAA CAGGGAAGCT CCCAAGGTCT 
    CTTATAAATT GCTCAGCTCT ACAGTTTCTA AGTGTNNACC ACAACGGAAT 
    CAAAGATACA TTTCCTTTTT ACCTTAAGGC TTTACCGAAA TTGCAAGTCC 
    TTCTCCTCAG TTCAAACGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26490763 [Map]; Strand: w
      • AT5G66310.1 - [+] show detail - ATP binding microtubule motor family protein
        Distance: 0; Region: exon2 (5UTR)
    Flanking Genome Sequence: 54-1416-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTG 
    CGGCTGTGAT ATCTCTTCTT AAGTCCTCCC CTCTTCTTCT TCTTCTTCTT 
    CTAAGGTAAT TATTGATTGA TTTCATTAGT TTTTGTTCTT TTGTATTCTA 
    GCAAATGCAA TTATAATATT TATAGCCTCT TAATTAGGCA ATTGTAACNT 
    TATGTAACAA CACTTTGCCA GACTGCTCTT ATAGGGGACC ATTTCTCTCC 
    ATATAACTCC AATTCCTCTC CTCTTTATAT CTTTTTATTT TATTTGAAGC 
    T

AT3G25020.1

Model type
Protein coding
Short Description
receptor like protein 42
Computational Description
receptor like protein 42 (RLP42); INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 40 (TAIR:AT3G24982.1); Has 101819 Blast hits to 28851 proteins in 1081 species: Archae - 42; Bacteria - 7146; Metazoa - 22681; Fungi - 1243; Plants - 63183; Viruses - 32; Other Eukaryotes - 7492 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66310.1

Model type
Protein coding
Short Description
ATP binding microtubule motor family protein
Computational Description
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3490 (InterPro:IPR021881), Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT3G51150.2); Has 12086 Blast hits to 11258 proteins in 438 species: Archae - 14; Bacteria - 210; Metazoa - 5156; Fungi - 1590; Plants - 1989; Viruses - 17; Other Eukaryotes - 3110 (source: NCBI BLink).
Link
InterPro Scan - TAIR