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54-1438-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19356599 [Map]; Strand: c
      • AT2G47150.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -3485; Region: intergenic
      • AT2G47160.1 - [+] show detail - HCO3- transporter family
        Distance: 879; Region: intergenic
    Flanking Genome Sequence: 54-1438-1 - 3-prime edge 
    ACTCTTATCA TGCTCAAAAG CATTAATTAA TTTGCTNTTG CTCCAAATTG 
    TAATCATTCA TTTTCCATAT GTATCCCACT CTTTTCCCAT GGGAGTGTTT 
    TTCATGTATA AATCAAAGAA AAGTATGTAT GCAACACATC ATGATGCATA 
    TTCTTTACGT ACTGTTTACT TGCATTGCAT GTGTAATTAA ATAGATC

AT2G47150.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G47130.1); Has 18921 Blast hits to 18911 proteins in 2224 species: Archae - 209; Bacteria - 14819; Metazoa - 517; Fungi - 741; Plants - 683; Viruses - 0; Other Eukaryotes - 1952 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47160.1

Model type
Protein coding
Short Description
HCO3- transporter family
Curator Summary
Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation. Localized to the inner plasma membrane domain in the columella, lateral root cap, epidermis, and endodermis in the root tip region, and in the epidermis and endodermis in the elongation zone. Under high-boron is transported to the vacuole for degradation.
Computational Description
REQUIRES HIGH BORON 1 (BOR1); CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT3G62270.1); Has 2647 Blast hits to 1412 proteins in 196 species: Archae - 0; Bacteria - 8; Metazoa - 1975; Fungi - 323; Plants - 233; Viruses - 2; Other Eukaryotes - 106 (source: NCBI BLink).
Link
InterPro Scan - TAIR