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54-1440-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25814079 [Map]; Strand: w
      • AT5G64570.1 - [+] show detail - beta-D-xylosidase 4
        Distance: -744; Region: promoter
    Flanking Genome Sequence: 54-1440-1 - 5-prime edge 
    GTTTGGATAC TCAACACGAT TGAGTCCAAT AGACTGTGTC GTGTGCATAT 
    ATGAAAGAGA GAGTTTGCTA AGTCGTTTTT TGGTTGAAAA TGATCATTAA 
    GAGCTGTGGC TAACTATTGC GTGTAAACAA GAAAGACAAA GTGTTTTATG 
    ATTACTTTGA AATACTGAAA CTTATGTGGA ATCATTTAGC NTTAATGTGG 
    NCCAGTTGAT GATCCCACAT AGACACATCT TTTAACAAAA GTGAATGCCC 
    TAAAAATTGT TATTATATAC GTGTTCACAA TGTGACAAGT CTAGTTTTCC 
    AGTAACTAAT CACCATTTTA CGTNGTGTGT GTAAANAGAA AAGTCATAGA 
    TCCCCAATAA GCAGAAAGTG TTTGGTAGTG ACCNTNTGAC GGANGTNTTT 
    ANANGNNTGC CCCCANGGGA NGGTNTNGTT TAAGNCCNAA AAACGGGNCN 
    GCTTTNNAAN GGGGGCCCTG NGAGNCAANC TTNCTTTCNT TTNTTTNNGN 
    NCNCNGTNCN TTTGANTNGN NCCCGGNNNT TNGGAANCCN CCNNACANTT 
    GANANAAANT NCCNGNNACC NNCCCCAAAN AAAAAAGGGN TTNTTAANNG 
    GCCNCGGTGC CCNTNNNCCC CCTTNNATNN NGGGANCGNC NAGAAAATTN 
    NGNNNCAANT ACNCGCCNNN TTTANNNNCC TTCNTTTGGG ANAAAACAAA 
    ACNNGTTNNN TTTAATGGAA ANCCATNANA N

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25814002 [Map]; Strand: w
      • AT5G64570.1 - [+] show detail - beta-D-xylosidase 4
        Distance: -667; Region: promoter
    Flanking Genome Sequence: 54-1440-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCAC 
    ATATATCGAA TTGACCATAC CTTAACGCTT AACCANACAT AGTTATTTCA 
    CCAATTATCT ATAAAGATAT TGCTACACTT AAAGAAGATG CCTACTTCTT 
    GATAAAAATC TACCATGCTT TTGGACGTGA AGAGATACAC AGACCAAAAA 
    ACTCAAACAT CTCGTTATTT TGAAAAAGAA AAGCNTATGT AAAAAAGTTT 
    GATATGGGGT CGTCTGAAAC ATTGTACTCT AGAGCCAAAC GACATCTATA 
    CTCACAATTT TATTTTATAC CGAAAAAGGT AAGTTNATAC GTTGAGACAA 
    AAAGAAATAA GTAAATNTTA TACGTAGAAT ATTCGATGTA CACTTTATGT 
    ATAAAGGGTA AACCCACTAT GCTNNATNNC TTTANGTTGC AAAACTATAT 
    NNAGTAAAAT CCGATNTATG ATTTAACANA CACATGACAN AGGCCATNNG 
    NCCTAATNCT NGGGTGGCAC AAACACCNTA TGGNCCGNAT CATTATTTNT 
    TTNCTCAAAN ACCGNGNGGA GNGGGGGTCA NATACCNNTT AATTATNNTA 
    CGGACAAAAC NGGGGGGGGG GNCCTGTANA NTTATTTTTT ATCAANNANA 
    GNNGCTTTTN TTNTANNAAA ANTNTTGNNT TANGGGGNNG GCAAAAANAA 
    AAAAAANGGG GGGGCCCCAA NCCTTNANCC CCACCCCNNN ATTNTGGAGG 
    GGGGAGGCGG NAANNGGNCC CC

AT5G64570.1

Model type
Protein coding
Short Description
beta-D-xylosidase 4
Curator Summary
Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.
Computational Description
beta-D-xylosidase 4 (XYL4); FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: xylan catabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 3 (TAIR:AT5G09730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR