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54-1440-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25814079 [Map]; Strand: w
      • AT5G64570.1 - [+] show detail - beta-D-xylosidase 4
        Distance: -744; Region: promoter
    Flanking Genome Sequence: 54-1440-3 - 5-prime edge 
    NTNCNCCAGT ACAACACGAT TGAGTCCAAT AGACTGTGTC GTGTGCATAT 
    ATGAAAGANA NAGTTTGCTA AGTCGTTTTT TGGTTGAAAA TGATCATTAA 
    GAGCTGTGGC TAACTATTGC GTGTAAACAA GAAAGACAAA GTGTTTTAAG 
    ATTACTTTGA AATACTGAAA CTTATGTGGA ATCATTTAGC TTAATGTGGT 
    CCAGTTGATG ATCCCACATA GACACATCTT TTAACAAAAG TGAATGCCCT 
    AAAAATTGTT ATTATATACT GTTCACAATG TGACAAGTCT AGTTTTCCAG 
    TAACTAATCA CCATTTTACG TTGTGTGTGT AAAAAGAAAA GTCATAGATC 
    CCCAATAAGC GAAAGTGTTT GGTAGTGACC CGTGACGGTG T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25813954 [Map]; Strand: w
      • AT5G64570.1 - [+] show detail - beta-D-xylosidase 4
        Distance: -619; Region: promoter
    Flanking Genome Sequence: 54-1440-3 - 3-prime edge 
    ACATATATCG AATTGACCAT ACCTTAACGC TTAACCAAAC ATAGTTATTT 
    CACCAATTAT CTATGANGAT ATTGNNNCCC NTNGGNANGA TGCCGNCTTC 
    TTGATNNAAA TCTACCATGC TTTTGGACGT GAAGAGATAC ACAGACCAAA 
    AAACTCAAAC ATCTCGTTAT TTTGAAAAAG AAAAGCATAT GTAAAAAAGT 
    TTGATATGGG GTCGTCTGAA ACATTGTACT CTAGAGCCAA ACGACATCTA 
    TACTCACAAT TTTATTTTAT ACCGAAAAAG GTAAGTTTAT ACGTTGAGAC 
    AAAAAGAAAT AAGTAAATTT TATACGTAGA ATATTCGATG TACACTTTAT 
    GTATAAAGTT TAAACCCACT ATGCTTTATT CCTTTTTGTT GCGAAACTA

AT5G64570.1

Model type
Protein coding
Short Description
beta-D-xylosidase 4
Curator Summary
Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.
Computational Description
beta-D-xylosidase 4 (XYL4); FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: xylan catabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 3 (TAIR:AT5G09730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR