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54-1467-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26507010 [Map]; Strand: c
      • AT5G66350.1 - [+] show detail - Lateral root primordium (LRP) protein-related
        Distance: -441; Region: promoter
    Flanking Genome Sequence: 54-1467-1 - 5-prime edge 
    CACAGGTATA CACTACGCAA CCAAAGCAAG ATTTCGCTAA TAATAATTAA 
    AATTGCATCG AATCTAACTA AAGAATCTAA AAATACAAGT ATACCCAGTC 
    CCCAACGTTG TGTAGGACGA TATATGATTA TAAAGTTTTA GTTTAGATAT 
    TACATAACTA TAGATTTCTC ATAAATAAAG AAATCTTCCG TTCATTTCAC 
    TAAAATATCG TTCGAACAAA TAATACACAG ATTAATATCT AAACGTAAAT 
    CATATAAACA AATAGTGTAG GATTTAATTA TAGTAGCATT TTGGCAAACA 
    CAAACAGACA AACAAAGGAA GAGGCAGCGT GTTTTCCGGT AGAGAAAAGA 
    CGGAGAGAGT AAAAGCCGAA GTTGTAAACG TGGCAACATA TTGACCGCAG 
    GATCTAAAAC ACGTGATGAT CAACGGTAAG ATATATCTTG TCCGAGAAGT 
    GTTTTGTGAT ATTAATTGGT GTAAGGAAAA TCTGGAAAAC ANNCNNGNAA 
    GAANNGAGAG ACNGAGAATT TAATAAGAGA GGAAGAGTAT TNANGTGATG 
    GCGGCGTTGC NNAGCGCGAG ACNGAGAANG AAACCTCTNT GANANACANN 
    NNNNNNTNTN TNTNTNNNNN NNNTNNNNNN CNCTNNNTNN NG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26507126 [Map]; Strand: c
      • AT5G66350.1 - [+] show detail - Lateral root primordium (LRP) protein-related
        Distance: -557; Region: promoter
    Flanking Genome Sequence: 54-1467-1 - 3-prime edge 
    TACCTGTGAC TTTAAAATTA AGTGCCTAAA GTTCGCAGCT GGAAAACAGT 
    TGCTTATCCA TGTTTCCAAG GAAGCAAATT ACTACTCTGT TATTTTTATC 
    ATTATATATA CAAACTTTAA TAATGAACAC CTGATAGTAT TAAAATATTT 
    AATTATGTAT ACAATACATA CACCTGATGT ATATCAATTG TCCCGTATAC 
    CTATACCCCA TGAATCTTAA TTTAATTGAC CAATTAATCA TTCCAAATTT 
    TAACGAATTT CAGTTGTTTC AGAATATCAA ACTACAGACA AAGTAAAAAA 
    CTGAAGATAG TTCATGGATT TTTCCAAAAG GATATGGAGA GTTGACTAAT 
    AAGAAGAGGG GCACTATAGT CATTTCCTAG TGGAAATACC CACTGTTGTG 
    TAAAAGAGAG AATACATTTA ATGAAAGTGA GGTTGTAAAA AATACATGTA 
    TTTATGAAAT GGATGAAAGT TATTGTTGAC ATAAACAATC AGCAAAATCA 
    TCTATCCAAC CTCTTCACCG TATTGTAAAC AATGTTAATG TGTATCTATG 
    AAATAGAGTA TAAAAGACAA CTTTAAATTT GATCTAGAAG CTGTAAATTT 
    CAGAAATCAA TTTGGATGTT TTAATGGTTT TCTTGTTATG ACAATCTTAA 
    TGTATGTGAN GGGTTTGTAC TTTGTTGAAT GCAAAAATTA TGAGTGACTG 
    AAATAGAGGA G

AT5G66350.1

Model type
Protein coding
Short Description
Lateral root primordium (LRP) protein-related
Curator Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.
Computational Description
SHORT INTERNODES (SHI); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR