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54-1494-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26111250 [Map]; Strand: c
      • AT5G65330.1 - [+] show detail - AGAMOUS-like 78
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1494-1 - 5-prime edge
    ACTCNAGNAA GGAATGTTGT GGAGAGGTGG CAGAGAANAT GTCTGTAGCA 
    GACTGCTCGC ATCATAGCTT GAAAACATGT CTTGAGAGAA GCTAATGTTA
    CCGACCGCAT TACCATAAGG GTTCTGGTTG AAATCAGAAG AGAATTCATG
    TGGAACCGTG TTTGAGAGAT TAGGATGTTG TAGACCGTTG TTGTTGTTGA
    TGATTTCACT CATCATACAC ATGTTCTGAT CAAAACCATG AAGCTGATCC
    TGTTGCTGCA TCAAGTGATT ATTCAACCCG TAGTTATTCA CTGCAGATGC
    TTGTACCGAA AGTAACGGTG AGTAGTCTTG T
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26111375 [Map]; Strand: c
      • AT5G65330.1 - [+] show detail - AGAMOUS-like 78
        Distance: 24; Region: intergenic
      • AT5G65340.1 - [+] show detail - Protein of unknown function, DUF617
        Distance: 2023; Region: intergenic
    Flanking Genome Sequence: 54-1494-1 - 3-prime edge
    GTTTTCCTGG CAACTCAAGA CTTCTCTGAT AACAAAATCT GTCCAAAAGA 
    ATTTGTTTTT TTGAAGCT

AT5G65330.1

Model type
Protein coding
Short Description
AGAMOUS-like 78
Computational Description
AGAMOUS-like 78 (AGL78); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell, sperm cell; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 52 (TAIR:AT4G11250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65340.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF617
Computational Description
Protein of unknown function, DUF617; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF617 (TAIR:AT2G22460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR