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54-1504-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 84778 [Map]; Strand: c
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: 0; Region: intron1 (CDS)
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: -623; Region: promoter
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: -638; Region: promoter
    Flanking Genome Sequence: 54-1504-1 - 5-prime edge 
    AGACAGACCA CCAGGTATTT ATTATTAGGA GAAACTCCAC TTTCTTGATT 
    GATTTTTATT ATCATCTCCA CACTGCTTTG GGTTGTTGAT ATAGTTAGTT 
    AGTTAGTTAG TGATGAATTA CACACTGCTG CTGTGGCAGA TTCATCTGAA 
    GATAGATCAA GTTCGGTCTA TGAGTTTCTG TATCCCCGTA AAGAGGAGCT 
    CCCTGATGAC AAAGAAATGA CTATTTTCGA CCATCTCGAG GAGCTCCGGG 
    AGAGAATATT CGTCTCTGTT TTGGCTGTAG GAGCTGCAAT CTTGGGATGC 
    TTCGCCTTCT CCAAAGATCT TATTGTCTTT CTTGAAGCTC CCGTCAAAAC 
    TCAGGGTGTA CGGNTTCTCC AGCTTGCTCC TGGCGAATTT TTCTTCACAA 
    CTTTAAAGGT AATGATCAGA TTGACGACAG ATAGCATCAT ATTCAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23426386 [Map]; Strand: w
      • AT3G63445.2 - [+] show detail - other RNA
        Distance: -48; Region: promoter
      • AT3G63445.3 - [+] show detail - other RNA
        Distance: -158; Region: promoter
      • AT3G63445.1 - [+] show detail - other RNA
        Distance: -24; Region: promoter
      • AT3G63440.1 - [+] show detail - cytokinin oxidase/dehydrogenase 6
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: 54-1504-1 - 3-prime edge 
    TTGGTTGGTG CGTATTGGTT CTTTCTNCTT CTTCTTCATC TTCCCTGTTG 
    TGTACGAAAT TGGGATACTA CATATATGGA TACGCATCAT CGGAAACAGT 
    ATGTACAATC TTTACTGATA GAGTTTACTA CAGAGAGAGA GAGAGAGAGA 
    GAGNGGC

AT2G01110.1

Model type
Protein coding
Short Description
Sec-independent periplasmic protein translocase
Curator Summary
mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.
Computational Description
ALBINO AND PALE GREEN 2 (APG2); FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: thylakoid membrane organization, double fertilization forming a zygote and endosperm; LOCATED IN: chloroplast thylakoid membrane, receptor complex, chloroplast, integral to thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec-independent periplasmic protein translocase (InterPro:IPR002033), Sec-independent periplasmic protein translocase, conserved site (InterPro:IPR019820), Twin arginine-targeting protein translocase, TatC (InterPro:IPR019822); Has 5953 Blast hits to 5918 proteins in 1859 species: Archae - 177; Bacteria - 3492; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2203 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.1

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527); Has 675 Blast hits to 668 proteins in 199 species: Archae - 9; Bacteria - 0; Metazoa - 335; Fungi - 166; Plants - 90; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.2

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527).
Link
InterPro Scan - TAIR

AT3G63440.1

Model type
Protein coding
Short Description
cytokinin oxidase/dehydrogenase 6
Curator Summary
This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational Description
cytokinin oxidase/dehydrogenase 6 (CKX6); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1); Has 6490 Blast hits to 6485 proteins in 1279 species: Archae - 163; Bacteria - 4080; Metazoa - 140; Fungi - 1069; Plants - 530; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63445.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.3

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR