Home
Mutant Lines
54-1516-3

54-1516-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 1871055 [Map]; Strand: c
- AT5G06170.1 - [+] show detail - sucrose-proton symporter 9
  Distance: 0; Region: intron1 (CDS)

CTTGGAAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
TTCCCATCCT ACTTTCATCC ATAACTCTGT TGTATTGCAC TTGTATCAAG 
CGTTAACGTC CATGATTCGT CTCTGTTATT GTCAGAGACT CTGATGGCAT 
TGGTAGGAAG GGCCATCCGA CCAGCGATCT TCCGGTGCTC CTCAGCCTTT 
TTAGTAACCA AAACTGTCAT TGCCAAACAC ACCGCGAGGA TTATGTTCAC 
AGCTCCCCAA AGCCTTTTAG CTCCAATTTT CTTACTAATC ACTCCAATAA 
CAAGGGACAT GACTCCAAGA ACGATAGAGT TAAGCATCAA CCCCAACGAA 
CCAACTTGGA TTCCGTGGTT GTATAGTTTC TTCATTTTGT CATCTCCTGC 
TGAGTCTCCA CCATACACTT CACGACCCAT CCAATCGGTA TCGTATAAAA 
GAAAAGGAAA CCATGCGATC CANTTCAAGG CCGTGACNGC TANAANCATC 
CACATTGGAC GTTTCATCAC CTTGAAAGCT CCNNNNATNA NNNNNNNNGG 
CCGNCNACCA CNCCCGCGCN NNNNNNNNGG GNAGGNNGTN TTTAANGGGG 
GGGGGGNANC CCCGNNCNCC TTNTTT

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 651882 [Map]; Strand: c
  - AT5G02840.1 - [+] show detail - LHY/CCA1-like 1
    Distance: 0; Region: exon9 (3UTR)
  - AT5G02840.3 - [+] show detail - LHY/CCA1-like 1
    Distance: 0; Region: exon9 (3UTR)
  - AT5G02850.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
    Distance: -228; Region: promoter
Flanking Genome Sequence: 54-1516-3 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCGATGG 
TCGGAAGTGA GATACATAAC TCTGTTGTAT TGCACTTGTA TCAAGCGTTA 
ACGTCCATGA TTCGTCTCTG TTATTGTCAA TAACAATTGT TCGAAAGCCA 
GGTTAATGGT AATTAGGAAA TTGAACCGTA TCGGTATGGT TTTAGCAGGG 
TCTTTAGAAC CTTCTAATTG ATACTGAGGG TTTGCGAATT TTGTATAAAC 
AGTTGAACAC TAAACAGAGA AGAGAAGCT
```

AT5G02840.1

Model type: Protein coding
Short Description: LHY/CCA1-like 1
Curator Summary: CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.
Computational Description: LHY/CCA1-like 1 (LCL1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G09600.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G02840.3

Model type: Protein coding
Short Description: LHY/CCA1-like 1
Curator Summary: CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.
Computational Description: LHY/CCA1-like 1 (LCL1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G09600.1); Has 1341 Blast hits to 1331 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 0; Plants - 1058; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G02850.1

Model type: Protein coding
Short Description: hydroxyproline-rich glycoprotein family protein
Computational Description: hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med4 (InterPro:IPR019258); Has 258 Blast hits to 243 proteins in 75 species: Archae - 0; Bacteria - 23; Metazoa - 102; Fungi - 36; Plants - 37; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G06170.1

Model type: Protein coding
Short Description: sucrose-proton symporter 9
Curator Summary: sucrose symporter with hight affinity for sucrose (K0.5=0.066 +/- 0.025mM), that can also transport a wide range of glucosides.
Computational Description: sucrose-proton symporter 9 (SUC9); CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sucrose-proton symporter 7 (TAIR:AT1G66570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR