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54-1518-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3465547 [Map]; Strand: c
      • AT5G10960.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 54-1518-1 - 5-prime edge 
    CTGGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTCAACAAG TCACTTACTA ACACCAATTT GCCAATTTAC 
    ACAACGACGA TTCTATTTTG GTCTTCTCAC ACTCACAAAG ACTAAAGAAA 
    TATATCTAAT CGCACTTCCC TGGAATTTTC AATGTATCTT TCATTCCTTT 
    CTTCTTAATT AGCAACAGTA GTACTAGTAC CATCTTCCAC ACCTAGACCA 
    TACAAGACTC CAGTGTATTT CTCAGTTGAT CCCGGGAAAT AACGTTCCTT 
    GAGCTTCCTA AACGACCCTA AGGTGAGCAA GCTATCCGAC CCAGCGTNGA 
    TGACNAATCC CAACTCTCTG CNGTNCCATA AGCTCCGCAT GTCTGTTCAA 
    TCCACCAAAC AGTGNGTNGC AGAACGTCAT CAAGTGCTTG ATATCGNAAA 
    CCGTAGGGAG NTNCACATAC AGAAGCCGGG NNGAAATCCN CTTGCNNGAG 
    AGGNNAAAAA CTTACGGGGG GGGGGGGGGG NCCNTNTNCN CNANNTCATN 
    TNCNCCATGG ANCGCNNNNN NTTTNGANCG GGGGGGGGNG CCCNCGAAAN 
    NANGANNTNN TAAGANNNNN NNGNNNNANN NNNTNNGACC CCNANCNANG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3465555 [Map]; Strand: c
      • AT5G10960.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 54-1518-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTGTGTCTTT GTTGCTTTGT TTTCAGGAAA ACCCCTNGTG ATCAAAATTT 
    GAGGGGTTTT TGTTTTAGCT TGAGTTTCTG AATGTATATC AATTCAGCGT 
    ACCNGATTAT CNAATAAANA ANCTCCAAGG GNNNTTNNTN TTCTCTCNTC 
    TTTTTGTGAN TGTNCAAAAA AAAANNAGNC NCCCTGGGGG NGTNANAAAC 
    CTCCCNNNGG AAAACCGCNN TTCTCTNCCT CTTTNNGAGT GNGTTTTNNA 
    NATACTAGGG ACCAATGAAN CTTNACAGNN GCTTTTNTAA ACTAGGNAAC 
    CCNTAAACCA GNNGGCGGTT TCTGNGGGAA GGNNNGCAAN CCCCCCCNNN 
    GAAACANCCC CCCNNGGGAG AGTTANCCCC CAAAAAAAAN NNNNACANTC 
    CTNTGGNCNC NTTTCTNTNA AGCGGGGGAT NAAAAAAAGA TTAANAAAAA 
    CAATTTATNN NCCCCACCTC AAAAANANNN ATTTTNTGTT TNTNTTTCCN 
    AAAAAANCCC GCGNGGCGAA AANCTTGNGN NTCNGGGGGG GGGGGGNCAA 
    NACGGGGAAA AAAANNNGGG GGGNGTTTTA NTNTTTNTGN GGNGGGGGAA 
    AAANAAATNT TNANTTTTNN TTGGTNGCCC CNAACCCCCC ACANAAANTN 
    ATTTTNNGGG GGGGNCCCCC CGAAAAAANA AAAAAAGGGC GCTACNAACA 
    CNNAAAATGG TTNNNGGGGC AAACAANANA CTTAGGGGGN GGGGGGNGNG 
    GNNA

AT5G10960.1

Model type
Protein coding
Short Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G80780.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR