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54-1523-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30381903 [Map]; Strand: c
      • AT1G80831.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 5422; Region: intergenic
      • AT1G80840.1 - [+] show detail - WRKY DNA-binding protein 40
        Distance: -1788; Region: intergenic
    Flanking Genome Sequence: 54-1523-1 - 5-prime edge 
    CTTAACTATA TGGAATCGCT TAATCCCATA TGCCGATCAT TTTGGACTTT 
    CTCATGCATT ACATCATCAT ATATTATTTC TTTCTTTCAT ATCTCATTTT 
    ACAGTCGAAC CTATAAGTAA TTTATATTTG ATATTCGAAT TTGGTTTAGC 
    ACAAACCAGG ACTGTACCTA TTCTTGTAAT TGTGAATAAT AAAATCTTAA 
    TTCAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30382019 [Map]; Strand: c
      • AT1G80831.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 5538; Region: intergenic
      • AT1G80840.1 - [+] show detail - WRKY DNA-binding protein 40
        Distance: -1672; Region: intergenic
    Flanking Genome Sequence: 54-1523-1 - 3-prime edge 
    TAGTTAAGTC AAGTTACTAT TTCAGATAAA TGGATAAGTT TGTCGTCTAT 
    ATGTTCTGTT ATCTCCAAAC CCAAATCTAT AACATTGCGA CATTTTTGAA 
    TCGTTAACGG CAAAATAAGT GGGGGGGGGG GGAAGGGANA AACNNNNNAN 
    CNCAAAAANN TTNCNACTTT NNTTTANCCG NGGGGGGGGN AAAAANCTCG 
    GGGGGGAGAG GGGCAAAANA AANANAGANC CCCNTGNTCT TTTTNTTNTC 
    GCNNAAAACN CAAGGNGNGG GNNANAAAAA AATGGGGGCG CTNGAAAATA 
    AAAANANCCA ACCGGNTNTN TNGGGGGGCC CCNCCCCCCN NCNGNGGGGG 
    CCCCCTCTTT ANCCCCCNTN NGGGGGAAAA AANANNTTTG GGGAAAACTA 
    NAAAAAAGGG NNGGGGGGNG NTNNAANTGG AGNNGGGGGG GGAAAGNTTT 
    TTTTTTTTTT NGGTTAGAAA AACANANGGG GGGGGGGGGG GGCCCCCCNA 
    AANNAAAANN CCCCCCCCCC NCGGNNTTTT TTTTCNNGGG GGGGNGGGGG 
    GCCCNNNTTT TCGGGGGGGG GGANGGGGTA NTTTTTTTTT TTNNGGGGGN 
    NAACCCCCCC CCCCNCCCCN CNNGGGGGGG TTTTNNAAAA AAAAAAATTN 
    TTGGTNNTGG NNNNNNNCCC CCCNNAAAAA ANNCCCCCNN AANANAAAGG 
    GGNNGANNGN NNTTTNNTTN NCCCCNNCCC CCCGGGGGNA AAAAAAA

AT1G80831.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80840.1

Model type
Protein coding
Short Description
WRKY DNA-binding protein 40
Curator Summary
Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.
Computational Description
WRKY DNA-binding protein 40 (WRKY40); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 18 (TAIR:AT4G31800.2); Has 3306 Blast hits to 2859 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3292; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR