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54-1535-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7885474 [Map]; Strand: c
      • AT1G22320.1 - [+] show detail - pre-tRNA
        Distance: -1020; Region: intergenic
      • AT1G22330.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -1068; Region: intergenic
    Flanking Genome Sequence: 54-1535-1 - 5-prime edge 
    GNCTTNGACC CGAGGTAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACTTTCATC CCCACAACAT GCTTCTTGCT TCATTATTTG 
    ATTCTGTGTC AAAAACATTC TTCTTGCTTA TGATTAGTTA GTTTTATTTA 
    TCAATTTATC AAAAAAAAAA ANACTNTANC TNGCTAAANC TNNTNAAANC 
    CNCTNTTTTN NGANAAAAGG ATTTTTTTNG GGGNNANANC AAANAAAAAA 
    TCCNTTTCCN NGCGTNCNCN TCCNTNNNTN NGNAAATNTN GTNAAAAAAA 
    AAAANGTAAA AANGGGNTTN AACNNNNTTT TNGAAAAGGN NNTNGAANGG 
    GGTTTTTNAN TTTTNNAANN AAAGGGGGGG GGNAAAAAAT TGGNAAANAC 
    CCCNNNAANG GGCNGAAAAN CCCNNTTTNA AAANNNCCCC CNGCNNCNNG 
    GGGNCCCCCA AAAAANANCC NCCCCNTTTT TTTTTTTNNN NAAANNTTNA 
    NCCCCCCCCC NNTNANTTTT TTCNNNCCCA TNNGCCNTTA ANNNTTNANG 
    NAATTTGGGG GGGGGGGNNC CAAAANANGG GGTNTNNNNT GTGCCCCCGT 
    NTTTNNNNGG GGGCNNCTAA AAAANCGGNG TTTNNTNAAN GCCCTTNNGG 
    NGNACNNTGG GCCCANNANA AAANNGGGGG NTTTTTTAAA NANAAAGTTN 
    NAGAAAAAAN NCNNGGGAGA NAAANNNNCN NTTTNTTANN NGGGNCCCNN 
    CANANATTTT GNNTAAANAN AAAAAGGGAG NGNCANANTT TNNNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7885518 [Map]; Strand: c
      • AT1G22320.1 - [+] show detail - pre-tRNA
        Distance: -1064; Region: intergenic
      • AT1G22330.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -1024; Region: intergenic
    Flanking Genome Sequence: 54-1535-1 - 3-prime edge 
    TACTTGTGAT TAAAACGTCG TCTCTAACTT CATGTCAGAA CTCATAACTA 
    ATTCACTACT CGAATATTAA TGGACATAAT TATACAATCA CATCAAAACG 
    ATCAAAACTG TATGTACTCT ATTCATATAA AACTCTCAAT TTAATTTTAC 
    AGCNTTGGTA CTAATAAAAA CAATTGGATA TGGATTTATA TTAATATTTT 
    ATAGCTACTC ATAGTCATAT GTATATATCT ATATATTGCC GTCTTTTTTA 
    GTCTAATATT AAATAGTCAA TTTTCTAAAT GGGGGATGAG AAATCTCTAC 
    AGGGATCGAT ATATATATAC TCAAACTACA AAACTATCTT TTCACCAGTT 
    ATTTACTTTT TATGGCTTTG GTGGATATAA CAATGGAATT

AT1G22320.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Met (anticodon: CAT)
Link
InterPro Scan - TAIR

AT1G22330.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G78260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR