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54-1539-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3950587 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    2. Chromosome: 4; Position: 3952189 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -1587; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4993; Region: intergenic
    3. Chromosome: 4; Position: 3953256 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -2654; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 3926; Region: intergenic
    4. Chromosome: 3; Position: 13590894 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 6920; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -10906; Region: intergenic
    Flanking Genome Sequence: 54-1539-1 - 5-prime edge
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG TGGTCGATGG CTATGCCTAG AATGTGGGAA
    ATCCGCTATG GATTCTGATG AATGCCAGCC TTTGTACTTT GACATGCGTG
    ATTTCTTCGA AAGCTTTCAT GGNGNANCCA AAGNCCATAT GAACTCTTTG
    GCTTTGTGTC TTTTAACAAG GATACAATTC TTACGCCTTT AAGATCCCGT
    TGCAGTTTAA GTTCTTTTAC TCAATCATAC ACATGATATC AAGTCATATT
    CGACTCCAAA ACACTAACCA ACCTTCTTCT TGCTTCTCAA AGCTTTCATG
    GTTTAGCCTA AGTCCATATG AGTATTTGGC TTTGTGTCTT CTAACAAGGA
    AACTCTACTT AGGCTTTTAA GATCGGGTTG CGGTTTAAGT TGTTATACTC
    AATCATACAC ATGACATCAA GTCATATTCG ACTCCAAAAC ACTAACCAAC
    CTTCTTCTAG CTTCTCAAAG CT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26594604 [Map]; Strand: w
      • AT5G66630.1 - [+] show detail - DA1-related protein 5
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 54-1539-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AAACCATCAC TAAGCTTTCC ATACTTTGTT CCCCTAGGCT GCAAAGAAAA
    TTAGCCAAGA TCATAAGAAC TCAAACCAGT GGGATTATCT AGCTAGTTTC
    CTTCTTTTAA GTTTTAACGA TATGGTGGCT GATTATTCAT CTCATATCAT
    TCCCCTTTCC CGTGTTTTGT TGTTTGAAAG GTAAACTCAC CTCTAACCTT
    TCGCAACTGC AGCATTTGGG AGTTCCATCA GCTTCATGAA CAGGGCAGTA
    TCTTTCCTCC CAAAACGGAT GAATATTGTA CGTTTTCATC TGAAAGAATA
    CAGTTACAGT TACATTCATC GACACCGTGA CAACTTACTA CTGAGAATCC
    TAAAATGGTA TACCTTCTTC TCTTTGCAGA CATAGCAGTA CCGTTCATAG
    CAGGATTTGT GAAACTTGCC TCTTGAGTTT GAAACCTAAG AGAGTTATCA
    AGAATTTAGG TTTTGGATCA AACAAAAAAA AAATAACNTG TCANGGGGTA
    ATTTANTNTN CCAAACANTT NTCAAAAAAA AAANATTTCC NTNNNNGGGT
    TTNNAACAAG NCGGGGNNNN NNNNNACCCN NNCC

AT3G33055.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33058.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G66630.1

Model type
Protein coding
Short Description
DA1-related protein 5
Computational Description
DA1-related protein 5 (DAR5); FUNCTIONS IN: zinc ion binding, ATP binding; INVOLVED IN: apoptosis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), NB-ARC (InterPro:IPR002182), Powdery mildew resistance protein, RPW8 domain (InterPro:IPR008808), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: DA1-related protein 6 (TAIR:AT5G66620.1); Has 1986 Blast hits to 1972 proteins in 186 species: Archae - 0; Bacteria - 28; Metazoa - 152; Fungi - 18; Plants - 1741; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
Link
InterPro Scan - TAIR