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54-1539-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3950587 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    2. Chromosome: 4; Position: 3952189 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -1587; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4993; Region: intergenic
    3. Chromosome: 4; Position: 3953256 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -2654; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 3926; Region: intergenic
    4. Chromosome: 3; Position: 13590894 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 6920; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -10906; Region: intergenic
    Flanking Genome Sequence: 54-1539-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG TGGTCGATGG CTATGCCTAG AATGTGGGAA 
    ATCCGCTATG GATTCTGATG AATGCCAGCC TTTGTACTTT GACATGCGTG 
    ATTTCTTCGA AAGCTTTCAT GGNGNANCCA AAGNCCATAT GAACTCTTTG 
    GCTTTGTGTC TTTTAACAAG GATACAATTC TTACGCCTTT AAGATCCCGT 
    TGCAGTTTAA GTTCTTTTAC TCAATCATAC ACATGATATC AAGTCATATT 
    CGACTCCAAA ACACTAACCA ACCTTCTTCT TGCTTCTCAA AGCTTTCATG 
    GTTTAGCCTA AGTCCATATG AGTATTTGGC TTTGTGTCTT CTAACAAGGA 
    AACTCTACTT AGGCTTTTAA GATCGGGTTG CGGTTTAAGT TGTTATACTC 
    AATCATACAC ATGACATCAA GTCATATTCG ACTCCAAAAC ACTAACCAAC 
    CTTCTTCTAG CTTCTCAAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26594604 [Map]; Strand: w
      • AT5G66630.1 - [+] show detail - DA1-related protein 5
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 54-1539-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AAACCATCAC TAAGCTTTCC ATACTTTGTT CCCCTAGGCT GCAAAGAAAA 
    TTAGCCAAGA TCATAAGAAC TCAAACCAGT GGGATTATCT AGCTAGTTTC 
    CTTCTTTTAA GTTTTAACGA TATGGTGGCT GATTATTCAT CTCATATCAT 
    TCCCCTTTCC CGTGTTTTGT TGTTTGAAAG GTAAACTCAC CTCTAACCTT 
    TCGCAACTGC AGCATTTGGG AGTTCCATCA GCTTCATGAA CAGGGCAGTA 
    TCTTTCCTCC CAAAACGGAT GAATATTGTA CGTTTTCATC TGAAAGAATA 
    CAGTTACAGT TACATTCATC GACACCGTGA CAACTTACTA CTGAGAATCC 
    TAAAATGGTA TACCTTCTTC TCTTTGCAGA CATAGCAGTA CCGTTCATAG 
    CAGGATTTGT GAAACTTGCC TCTTGAGTTT GAAACCTAAG AGAGTTATCA 
    AGAATTTAGG TTTTGGATCA AACAAAAAAA AAATAACNTG TCANGGGGTA 
    ATTTANTNTN CCAAACANTT NTCAAAAAAA AAANATTTCC NTNNNNGGGT 
    TTNNAACAAG NCGGGGNNNN NNNNNACCCN NNCC

AT3G33055.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33058.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G66630.1

Model type
Protein coding
Short Description
DA1-related protein 5
Computational Description
DA1-related protein 5 (DAR5); FUNCTIONS IN: zinc ion binding, ATP binding; INVOLVED IN: apoptosis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), NB-ARC (InterPro:IPR002182), Powdery mildew resistance protein, RPW8 domain (InterPro:IPR008808), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: DA1-related protein 6 (TAIR:AT5G66620.1); Has 1986 Blast hits to 1972 proteins in 186 species: Archae - 0; Bacteria - 28; Metazoa - 152; Fungi - 18; Plants - 1741; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
Link
InterPro Scan - TAIR