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54-1548-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10255 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon1 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1548-2 - 3-prime edge
    TCTGGCCGGA TTCTTCANTC CNTNTNGGNT NNTACGNCAA CCAAGGCGCG 
    TCGAATCAAC NGCTCCTATA CCTTGTATGG NCGATCTNTN NCTCCAACGT
    GATTCTTCGT TNCTTCCTTN TTTTGNNGAA TCGNGTNTGT CNTNTGACNC
    ANANGACATC GNNTTATTAT AGCNATGCCN NNAGNGGATG NGNNGANGCT
    TATAGNACGG GANGAANCNA TGCCCNNGAG ANNTNCCCCN TGGACGAANA
    NTGGGCTNNN NANGTNCGGA NTNGCNAAGN GANNGGGAAN NGNTACATCC
    CNCTGTNCCT TTTNGAATTN NNNTGATTCT TANNNNGGTA CNTNNNNCNC
    NCCAAANCCN ANANCCCCAT AGNTAGCNCG NGTNGGCNNG TNNNNNNGNG
    NNGGNAGTTG GANGGGGAGA NAGNACGGAN NCCCANGCCA CCNNTANNAN
    NANNAANTGG GGGTNNNCGN GANAGAAANG NATNGNGTNG NGNGGTGGTN
    CGGNNGNNNN GGNGGGGANN NGGGNNGNGG NTGGACCCCT GNGANNGTGN
    NGCNNGGAGT GGGACCNCTG NNNATCNCNC CCGNNNNANN NCNCNNCNNG
    NGGNCNGNTC GNGCGNNGAC GGCTGCNGTN TGTNNGAGAN NCTGNNAGGA
    ANNNNTNCCN CGGCCGGAGA NNNGANNNNN NTGGTNTNNA NGGTCNGGNN
    NGGAAANNGT NGNNNNTAGA NNNNGNNCCN NCNATCAGCN NANTTNNNNN
    GTCGAGAAGT NNANTNAGNA NCCGGGNCTA AGCNTCNGNN NCNNCAGGTN
    NNNNNAANNG GNGAGCTGAG GGNNNNGGNN NAGN

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR