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54-1553-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 64661 [Map]; Strand: c
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-1553-1 - 5-prime edge 
    CTGGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC TTGGTTATAG ATGTACCATC AAAAATATTT 
    GCCTCCATTA GCTCCGGCGC ATTCAGACAA AACCCGGGAC ATCTTAAGTC 
    TTCAATCAGT AAGTATTTCA AAGAAGGAGC ATTTATCACA TATCCCCAAA 
    ACTCTTGTCC ATCATGGTCG TCATTAATCG TTAATCTCTT CAAAGAAGGG 
    ACCTCATCAA TAGTGAAAAC CTCAATATCA GAATCTTCAC CTCGAATCAC 
    AAGCAATTCT TCAAGAATAG GGCAGCCTGA TAAAAGGTTA CGGATAGATG 
    ATTCGTCTTT GTAGCTCACA AGCTCAAGAT GGAGAGTCCT AAGAGACTTC 
    ATTACTACCG GAGAAGAGAT ATCAACAAGA ATCAAAAGTA CGAGTCTCAA 
    AGTCTCAAGT GTGTTGCAAG TACACAAGCT ACTCGGAAAT TTGAAAGCCG 
    TCCCCGTCCC GGTATCAGCA GCAACGAGCA CCAATTCACG CAGATGTCTA 
    GAAAACGCAA TTCCAACCCA AAGTCCAATA TCTACAGGAT CAACTTTTTC 
    TGATTCAAAC TCAAGACGAA AGCTCTCTAG AACCGGGGCT TTATGTGAAA 
    GGAAAGATTT GCAAACTATC TCTGAAAATG TATACTGTTC TTTGTCGTCG 
    TAATCCTCAG AATCGAACTC GACCAGGACG AGGAGTGGTC GAGGATTTGT 
    CGACCAGGAG TTGAAATCGT CGAAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 64716 [Map]; Strand: c
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-1553-1 - 3-prime edge 
    AACAACTTTC TTGGATATCT CACTTCAGTC AAACGGTTGT TGTTGAATTT 
    ATCACCTTGG AAGGTAATTT TTCAATCGTC AATTGACTTC TTTGTTCGTT 
    GTCTTTATAC GCTAATAATA TTTGGTCTCA TGAATAGATT ACATATCCTA 
    CTGGAAGTAT CTTCTATCAG CTGGTATCTC TAGAGATGTA TACACGTGAA 
    ATAGATTGGT GGGATCTACT TACGCTCATG CTCGAACATT CTCCTAAACT 
    ACAAGTTCTC AAGCTCACTG ATGTAAGACA TTTTATTATT AGTCAGCTAT 
    GTATTTTTGT ATGATCTCTC GTTTATGATA TACTTTGAAT GGTTATTGTC 
    TCTTTGATCT CAGAACTGTG TGAAATTTCA TAAAAATGGT TTGCCGGGCG 
    GCAAATGGAA TGAGCCCAAG TATGTCCCTG AA

AT4G00160.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2232 Blast hits to 2187 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR