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54-1553-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 64661 [Map]; Strand: c
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-1553-1 - 5-prime edge
    CTGGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC TTGGTTATAG ATGTACCATC AAAAATATTT
    GCCTCCATTA GCTCCGGCGC ATTCAGACAA AACCCGGGAC ATCTTAAGTC
    TTCAATCAGT AAGTATTTCA AAGAAGGAGC ATTTATCACA TATCCCCAAA
    ACTCTTGTCC ATCATGGTCG TCATTAATCG TTAATCTCTT CAAAGAAGGG
    ACCTCATCAA TAGTGAAAAC CTCAATATCA GAATCTTCAC CTCGAATCAC
    AAGCAATTCT TCAAGAATAG GGCAGCCTGA TAAAAGGTTA CGGATAGATG
    ATTCGTCTTT GTAGCTCACA AGCTCAAGAT GGAGAGTCCT AAGAGACTTC
    ATTACTACCG GAGAAGAGAT ATCAACAAGA ATCAAAAGTA CGAGTCTCAA
    AGTCTCAAGT GTGTTGCAAG TACACAAGCT ACTCGGAAAT TTGAAAGCCG
    TCCCCGTCCC GGTATCAGCA GCAACGAGCA CCAATTCACG CAGATGTCTA
    GAAAACGCAA TTCCAACCCA AAGTCCAATA TCTACAGGAT CAACTTTTTC
    TGATTCAAAC TCAAGACGAA AGCTCTCTAG AACCGGGGCT TTATGTGAAA
    GGAAAGATTT GCAAACTATC TCTGAAAATG TATACTGTTC TTTGTCGTCG
    TAATCCTCAG AATCGAACTC GACCAGGACG AGGAGTGGTC GAGGATTTGT
    CGACCAGGAG TTGAAATCGT CGAAN
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 64716 [Map]; Strand: c
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-1553-1 - 3-prime edge
    AACAACTTTC TTGGATATCT CACTTCAGTC AAACGGTTGT TGTTGAATTT 
    ATCACCTTGG AAGGTAATTT TTCAATCGTC AATTGACTTC TTTGTTCGTT
    GTCTTTATAC GCTAATAATA TTTGGTCTCA TGAATAGATT ACATATCCTA
    CTGGAAGTAT CTTCTATCAG CTGGTATCTC TAGAGATGTA TACACGTGAA
    ATAGATTGGT GGGATCTACT TACGCTCATG CTCGAACATT CTCCTAAACT
    ACAAGTTCTC AAGCTCACTG ATGTAAGACA TTTTATTATT AGTCAGCTAT
    GTATTTTTGT ATGATCTCTC GTTTATGATA TACTTTGAAT GGTTATTGTC
    TCTTTGATCT CAGAACTGTG TGAAATTTCA TAAAAATGGT TTGCCGGGCG
    GCAAATGGAA TGAGCCCAAG TATGTCCCTG AA

AT4G00160.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2232 Blast hits to 2187 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR