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54-1554-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19615239 [Map]; Strand: w
      • AT2G47910.2 - [+] show detail - chlororespiratory reduction 6
        Distance: 0; Region: exon1 (CDS)
      • AT2G47910.1 - [+] show detail - chlororespiratory reduction 6
        Distance: 0; Region: exon2 (CDS)
      • AT2G47920.1 - [+] show detail - Kinase interacting (KIP1-like) family protein
        Distance: -538; Region: promoter
    Flanking Genome Sequence: 54-1554-1 - 5-prime edge 
    GGTATTTGGA TCGAACCATC GGATTCACCA TCAATTACAA GAGAGAAGAC 
    CCCGGGGATC CGCGGGAGCT GTCAGAGTAC CCGGACGTAA GACTATGGTT 
    CGTGAGGCTC GACGCGATGT ACCCTTGGCT GCCTCTGCTG CTGGACTGGC 
    GAGCTGGAGA ACTTGCTCGA TACGCAGCCA TGTTAGTGCC GCACCAGATG 
    AGCTTGAGAA TGGGTGTCGT TTTCAATCCG GAGGCGTTGG AGCTTTTCGT 
    AATGAACAAA GTGTTTGTGG TTTATCCGTG GCTGAAACGG CACGGCGTCC 
    CAAAGCCCAN GTTGAAGACG AGCGACATGG CCAGGATGCT CGGATTCGGT 
    ATCGGCGATG AGCTCTTCGA CTTGATCGA

AT2G47910.1

Model type
Protein coding
Short Description
chlororespiratory reduction 6
Curator Summary
Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.
Computational Description
chlororespiratory reduction 6 (CRR6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: NAD(P)H dehydrogenase complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1817 (InterPro:IPR014946); Has 166 Blast hits to 166 proteins in 69 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47910.2

Model type
Protein coding
Short Description
chlororespiratory reduction 6
Curator Summary
Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.
Computational Description
chlororespiratory reduction 6 (CRR6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: NAD(P)H dehydrogenase complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1817 (InterPro:IPR014946); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47920.1

Model type
Protein coding
Short Description
Kinase interacting (KIP1-like) family protein
Computational Description
Kinase interacting (KIP1-like) family protein; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT1G03470.2); Has 342 Blast hits to 342 proteins in 46 species: Archae - 2; Bacteria - 4; Metazoa - 5; Fungi - 4; Plants - 321; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR