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54-1559-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11566872 [Map]; Strand: w
      • AT4G21770.1 - [+] show detail - Pseudouridine synthase family protein
        Distance: -515; Region: promoter
      • AT4G21780.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -258; Region: promoter
    Flanking Genome Sequence: 54-1559-2 - 3-prime edge 
    GATAAATGCA TATTATTTTG GACATTTTAA CAAAGACATG TCGAAGATTG 
    AGGATTTTAA GCGAATATAG AAGTAGAGAT GTTGTTCCAA AATGAACAGC 
    CGAACAACGC AAATACAATG ACACAAGGTT GTTAGAGAAA TGACAAAATA 
    TGATTCGGTT GATAAATTAC ATAAAACTAT TTTTANNTTA GACTACAATA 
    TTCGAACAAC CTACATTTTC TTTTTGGCTA CACCCAACTT TTTATTTAAA 
    GCCATTATAC AGTAATCTGA CCTTTCTCTA ACATAAATCA TGATGGGCTA 
    ATTCAACTAC TTTTCCTTCT ATCATGCCGT AGATTATTTT TCACTTAGAT 
    TAGTATGTTT CTCCTTTTAC CATAAAGTCA GGGAACATAA TAATTTCGAC 
    CCATAAACAA ACTAGAGACT GCATGATTTT TAATTAGTAT CATAGTTTAA 
    GAAAAAAGTA ACTAATATTC GGTTTATCAA CCGTAGTAAA ACGGCCAACA 
    AACCGGAATG AACCACCNAA CCAACCAAAT TTATCACTGA ACCNAGTTTC 
    TCAATNGGGC CCCNTNCNNN NATTNNNNTN NGNCCNNNTA NNNNANNNNN 
    NNCNNT

AT4G21770.1

Model type
Protein coding
Short Description
Pseudouridine synthase family protein
Computational Description
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145); Has 5935 Blast hits to 5933 proteins in 1806 species: Archae - 0; Bacteria - 4596; Metazoa - 112; Fungi - 68; Plants - 78; Viruses - 0; Other Eukaryotes - 1081 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G21780.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR