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54-1600-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25097393 [Map]; Strand: c
      • AT5G62510.1 - [+] show detail - F-box family protein
        Distance: -758; Region: promoter
      • AT5G62520.1 - [+] show detail - similar to RCD one 5
        Distance: -605; Region: promoter
      • AT5G62520.2 - [+] show detail - similar to RCD one 5
        Distance: -634; Region: promoter
    Flanking Genome Sequence: 54-1600-1 - 5-prime edge
    CATAAGTGTA TAACTAAATA AATTAATCGA CAAACAATGT GAATGTGTGT 
    GATTACAATG AATAGGTTAA ATTAGATTAT GTATAGTGTA AACTCACCGA
    AATCGTGTTT GACTTGTATC ATTGCAATCA AATGTCTTTA TACAAACTTA
    TTTACTAACA ACATATCGTC TTCTAAGTAT GAACTCTTAA TTTTCAACAA
    ATTGAGATTC TTATATGTTT TAAAGTCATA TTATAAGCAC AATTAAGTCT
    TGTTTAAGAA AACGCATAAG TAGTCNAATT GATTAAAAAA CATATNGTAT
    ANAAAANCCT AAATTAATCG CAATGAAATA TTANNTAAAT GGGGGTNTCA
    ATAGGTAACT CTGGTTATTT TTGANTATCT ACAANTAATC CCTGAAAGAA
    ACTTGATTNA AATGAGCNNA CCGCTAGCGA TATNCAAATN CNNCTAGCGA
    TGACGNTTTN TCAATTTTAA CTGACTTGTG NNNCCCNANN CACTTTTNTT
    TTTNCNTGCN CCCNCNAAAA AAAACNNNCN NGCGGGGGNN TTTTAAAAAA
    NTNNGANCCC ANCCCCCAAN AAAAAANNNN NGNTTNGGGG NTNGNGCCCN
    TNTTTNTNTT TNNGANCCNN NTNNNGGCNN NNCNNNCNGG GAAAAAAAAA
    AAAACCNNCC GGGGATTTTN GGAAANGGGA AAAANCN

AT5G62510.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT5G62660.1); Has 2027 Blast hits to 1969 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2025; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G62520.1

Model type
Protein coding
Short Description
similar to RCD one 5
Curator Summary
Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.
Computational Description
similar to RCD one 5 (SRO5); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: similar to RCD one 4 (TAIR:AT3G47720.1); Has 162 Blast hits to 153 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G62520.2

Model type
Protein coding
Short Description
similar to RCD one 5
Curator Summary
Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.
Computational Description
similar to RCD one 5 (SRO5); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: similar to RCD one 4 (TAIR:AT3G47720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR