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54-1610-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19597579 [Map]; Strand: c
      • AT3G52870.1 - [+] show detail - IQ calmodulin-binding motif family protein
        Distance: -1757; Region: intergenic
      • AT3G52880.1 - [+] show detail - monodehydroascorbate reductase 1
        Distance: 3633; Region: intergenic
    Flanking Genome Sequence: 54-1610-1 - 5-prime edge 
    GNCTCTCGAN TNCGAGCNNA ATATGCCGGC CTTTTCTGAT AACNGNNCGG 
    NGCANGGAAT ATTCCCATCC NACNNTGATN CCTGANGTNG GNATTGNCCT 
    TTACTNANNC ANNCAANNNA NGATGGCCGA AGCCCGTNCT AGTAACACCA 
    TGGACCTCTG NGTCTTTAAC ANCTNAAACT AGGCTTCGTN TNAGANNGGN 
    GTTCCATAGA CTTNGNCACA TTNAAATTNN CACCTATATC CATAAATTAC 
    AATAGCTGAT TNTAATTAGA TTATTATNGT TGTGTCAGCT NGAANANGAT 
    CNNCGAGAAA AAGATGCTAG AATAAGATCG TTATATTATC NTGTATAANG 
    ATAGTNGGGA AANATAGATN AAATNTANCT GCNTGNGTCT GTCGGGATNT 
    TCTCAAATTC CCGCAATAAA GATGCAGGCG TTAANACGAA TCATGNGNAT 
    GNAATTCTNT GTCNGNCCTA TTCCGAACAT ANCAAGGATN GTTGGTCCTT 
    TNGCTTANTG CATTTTTTAN AATGTTCNTN TTCCAGTANT GATCTNTGAG 
    NGGCCCTNCG AGCNCNATTT CCNGGNNTGA CGNNTGGCAN TTCCCCACGC 
    GNNGATTAAC TNTGNCANGA CGNNGNNAGG TGNGGGCGNN ANTACTNTGA 
    ACNTAGTCNA AGGNAGGGNN CCTTATNAAT NGANCGTTNN GAAACNGNAN 
    NAANTNTTNC NTGTGTGGGG AAACNNANTA GGGCCCTNAG ATTNNTNNCN 
    CTAGCAATAA NNCCCANNAA CNGNNNGAAA TCANAAANCA NGANAAAAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23040561 [Map]; Strand: c
      • AT3G62260.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G62260.2 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-1610-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTAA 
    TTATTCCTCT CGTGGACGAA ATTTCTGAGC CGCGTGGGCT TTTTCTCTCT 
    GATTATATAT AAGAAGAAAA AGACTCGATT ATGGGTGACT GGGTAACCGG 
    TAAAATTCAG TTGACACGTG GCCATCATCT GTGGCGAGTC GGTTGCTTAT 
    GTAGATTATG ATCTCTGTTT AGTTTGTGGA TTACACACGG CTAAGACTAA 
    GCCCTAATTA TGACACGTGT CATTCGAGCT TTGACGCGCG TACCCTCGAA 
    CGACGTCGGA TTCTGAACCA CTCCTTTTTA AACTTTTACC AACTTCCGAG 
    GACTTTCTTT GGAAATAACG GGGATATTTC TGTAATAGGA TTAAATGNNT 
    AAGGGCNCNT TACGAAGTAC AAAACTTTCT GGNNCGGAAT NTCNTAAANG 
    AGNNCCCTTT TNNNNNNTNC CCCCCGCGGG GGGGNANGGN NNCNANCCNC 
    CTTTTNTTTT TTTNNGGNNN NTNNANCNAA AAAAAAAAAA AAAAAAACCC 
    CCCCCCCCCC NGCAAANAAN AAAANATNNN NNCNGGGGGG GGGGCGCNCN 
    CCNNNGGGNN NTTTTTTNNN NGNNNNNANN NNAANNAANA NCCCCCCCNN 
    NGNNNGGNNN NNNAAAAAA

AT3G52870.1

Model type
Protein coding
Short Description
IQ calmodulin-binding motif family protein
Computational Description
IQ calmodulin-binding motif family protein; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT3G58480.1); Has 341 Blast hits to 277 proteins in 58 species: Archae - 0; Bacteria - 26; Metazoa - 0; Fungi - 100; Plants - 209; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G52880.1

Model type
Protein coding
Short Description
monodehydroascorbate reductase 1
Curator Summary
Encodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2
Computational Description
monodehydroascorbate reductase 1 (MDAR1); FUNCTIONS IN: monodehydroascorbate reductase (NADH) activity; INVOLVED IN: response to cadmium ion, peptidyl-cysteine S-nitrosylation, hydrogen peroxide catabolic process; LOCATED IN: peroxisomal matrix, apoplast, chloroplast, peroxisome, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: Pyridine nucleotide-disulphide oxidoreductase family protein (TAIR:AT5G03630.1); Has 31553 Blast hits to 31492 proteins in 3048 species: Archae - 709; Bacteria - 24685; Metazoa - 865; Fungi - 647; Plants - 730; Viruses - 0; Other Eukaryotes - 3917 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62260.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G48040.1); Has 7561 Blast hits to 7526 proteins in 871 species: Archae - 12; Bacteria - 1200; Metazoa - 1621; Fungi - 783; Plants - 2603; Viruses - 9; Other Eukaryotes - 1333 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62260.2

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G48040.1); Has 7565 Blast hits to 7530 proteins in 876 species: Archae - 12; Bacteria - 1215; Metazoa - 1621; Fungi - 781; Plants - 2594; Viruses - 9; Other Eukaryotes - 1333 (source: NCBI BLink).
Link
InterPro Scan - TAIR