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54-1616-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 190119 [Map]; Strand: w
      • AT4G00430.2 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: -2492; Region: intergenic
      • AT4G00440.1 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: -3760; Region: intergenic
    Flanking Genome Sequence: 54-1616-1 - 5-prime edge
    TTATGTGCAT GATCTCCAAG TACGTATTTC TTGAATATGG CGATTACGAT 
    CGAGTTTGGA ATGAGAGGTA ACAGCTTTGG AGTGGGCAAT GATGTTCTTG
    GTTTTCAAAA AAGTCATCTT TACATGATCC GGGAAGTCAC CGACAACTGA
    GAGGTGTGTT TCCTTCAATT GACTTTGATG TTTGAAGGCA TGCATAGATG
    GTAACATGTG TGACGATATA ATTGTCAAAA TAACATCATG TTTTGTGATA
    TGAGGCGTGT ATTGATGTTT GTACTTCACG TTCGCTTAGA ACAACCATTG
    AGAATGATGT CAAGAGAACT CTTGTATCCT GGTTAGATAA GACTTATGAT
    ATGATCATCG CATGTTTTAT CATATAAAGT TTTTTAAGAA TAGAAACAAC
    TATGAATGTA AAAAAAAGTT ATACATAGAA CAAATTCAGA CTCTAGATTA
    ATTATACGCC ATTTTTTATT TTAAACCCAC ACATTAATAA TCGAATTTAT
    AATGCTAATC AGAATATTTA GTGATATGTA TCTAGTTTGT TAACAACTCT
    AAGAAACTTC GATATCGGAG ATTGGAGACC GGGGAAGANA GAGTTATGAC
    GGAACTTTAT TAAATCCAAA TGTTGTACAA AGCGAATGTA ATCATACTTG
    AGCTTATATA CTTAAGATTA ATGTGAACAT TG
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 190043 [Map]; Strand: w
      • AT4G00430.2 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: -2416; Region: intergenic
      • AT4G00440.1 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: -3836; Region: intergenic
    Flanking Genome Sequence: 54-1616-1 - 3-prime edge
    TTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTT 
    TTTTAAAAAT AGACCGAACT TTACTAGTTA CTATCTACCA AACAGGTTAT
    GAAAGTAGGC AAAAGGGGAA GGGTCAAAGG CCCATGAGAC ATATTTTCCA
    AATAGACACT AAAAATGAGC CAGATTTTTC AACAACACAT TTGGTTTAAG
    GGCTCAAAAA ATATTTGTCA ACACCCAGTT TTAAAACAAA AGAAAATAGT
    AAATTACAGG CCCAAAAGTT TTGTTGCCAT ATAGATATTA GTATTTCTTA
    ACCAGTCGCT GATAATTATT GATGAATAGT TGAGAGACGA TAAAGATTGA
    GCTGTCTGGA ATACAAATCA AACATGATAT TGTTCGTATA CATTATTACT
    CAACGAACAT TCACGTTTCC AAATTCTGAT ATCTTTTCTA ATATTTCTCC
    ACATGTAGCA TGTAATTAGT TACAATTTTA AAATGAGTAC CAAAAACGTG
    AAATTATTAC AATAACGTAT AAATATTAAA ATTTCTCGA

AT4G00430.2

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
TRANSMEMBRANE PROTEIN C (TMP-C); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00440.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3741)
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1239 Blast hits to 1045 proteins in 162 species: Archae - 0; Bacteria - 74; Metazoa - 262; Fungi - 79; Plants - 239; Viruses - 0; Other Eukaryotes - 585 (source: NCBI BLink).
Link
InterPro Scan - TAIR