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54-1622-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 43149 [Map]; Strand: w
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1622-1 - 5-prime edge 
    CTGGATNGAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTNCGGGATT 
    NTCCCATGCC TANTTTCGTN CCTGCACAAG AGTCGCACAC TCCTNTCTTT 
    TAATACATAC CATTTTCCAT TTTCATCTTT TCTTATTTCT CAATATATAT 
    ATTCTTTTTC CAGAAATATA CACATATGTA TNTACCCTTG NTAGAAGACA 
    CAAAGCCAAA GACTCATNNG GACTNTGGCT ACACCATGAA AGCTTTGAGA 
    AGCACGAAGA AGGTGGGTTA GTGNNGAGGA GNGGANTATG ACTTGNTGTN 
    AGNGTGTATG ATNGAGTATG AGAACTGAAA NCGCGACCAG ATNAACANAA 
    GNCNGGNGNA NTGTGACCTN GGNAGAAGAT ACANAGCCNA AGACNGATAA 
    GGACTTTGGN GGACNATGAN AGCNNGAGNN GCCCAAGAAN GNGGGNGGGG 
    GCGGGGGAAA AAANTNTGAT TGTGGTGTGN GGGGAAAAAA NGNGTAGNNG 
    ANCTGGGGGG NGNGGGCNNA GNNNAANNNC CCNCNNNGGG NCCNTTNNTG 
    NNNGGNNNAA NNGGGNNNNN NNNGGGGGGN CGNGGGNCGN GNNANNNAAA 
    ANNGNNGNNN GNNGNNNNGG NNNGGTTGGN CCNCNAAAAA AAANNNGNGN 
    NNNGGGGGGG GGGGGGGGGG NANAAANNNN NNNNANAAAA NAANNNNNNN 
    NTTNNNNGGG GGNNNNNNNN CCCNNNNGNN GNNNGNGNNG CGGNAANNGN 
    NNNGGNNGNA N

AT4G00120.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
INDEHISCENT (IND); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: polar nucleus fusion, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G09750.1); Has 2280 Blast hits to 2276 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR