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54-1623-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 190092 [Map]; Strand: w
      • AT4G00430.2 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: -2465; Region: intergenic
      • AT4G00440.1 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: -3787; Region: intergenic
    Flanking Genome Sequence: 54-1623-1 - 5-prime edge 
    TTATGCGCAN GGGNNACNAG TCCNTNTTNC TTGNGTATNG NAGATCCCAC 
    ATGCGAAGTG TGGNATGGAN AGGTANNAAA AGCCAGNNCN NNCAAGNGAG 
    GTCCTCTGNC TCTCTCCTTG TNGGNTAAAN ATGANCACGG TGANATANNA 
    GANCNNTGGC ACAGTGTAAA AANATTNAAT ANNCTTGGGN GATCTGAAGG 
    CGTGNNTNGG TGACATNCNT ATTGACAGAG CATANGGCGN GAAANTGACA 
    ACATAGCNCT GATNANATAT AGGCTGGGTC TGAGAGANTC GTACGANCNC 
    ANTTCNCGNN GTGAACCACC CATNTANATN ACNCNTCTGA AAACGAATAN 
    TNTCCNGGCC GGNNCGTACN CCNNACATGC CCTATANATG TTATATCATA 
    TAAAGTTNNT TANGAATANA ANCGACTCTG ANTGTAAAAA AAAGNTGTAC 
    NTANAACAGA TTCANACTCT AGATTAATTA TACGCCATGT TTTNTTTGAA 
    ACCCACACNT TAANAATCNA ATTTATNATG CTAATCNGAA NATTTACGNG 
    ATATGTCTTT ATGTGTGGTT TNCCNCCNTA AAAANCTTNN TATNTCGGGA 
    TATNGGAAAC CGGGGAAGAN NAGANTTTNT GGACGGAACN TTTATNANAN 
    CCAAAGNGTN CGTNCCAGAG CNANANGGNG NCCTTCCTNG GGGCTNATTT 
    TCTTAAAGAN TAAACGAGAA NATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3155169 [Map]; Strand: w
      • AT1G09730.1 - [+] show detail - Cysteine proteinases superfamily protein
        Distance: -789; Region: promoter
      • AT1G09730.2 - [+] show detail - Cysteine proteinases superfamily protein
        Distance: -789; Region: promoter
      • AT1G09740.1 - [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 54-1623-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTT 
    ATCAATATAC ACTTCTATAG ATAACAGATA AGTAATTGCT CCAGATTCTA 
    ATCCATCAGT GAAAGAGAAA TATTCTAATC CATAAAACTT ATAGAATTAC 
    ACTACTAGAT CTGGACTATG AGGTAAAATA TCCCATTCTC ACAGGGGACA 
    CAAGGGAAAT AACTCTACTC ACAGATTTTT CAGCACAAAT TTGACTAGCG 
    TGTTCGAGGA TGGTGTCGGT GATCCGCTTC TGGTGTTGCT CGATTGCAGC 
    AGTGAAAGCA GGAACCTCAA GACCACCTTA ATCGCAAAAT TCCCAGAGTC 
    AAACACCACA TGGTCGAGAT CATATATACA TTAAACAATC ACAAAATTAG 
    TAGTAACGAG ACTCAACTGG GACCACCGAA AGGTATGGTG CCGGGACTCA 
    CGCCGGCGGC TACAGAAGGC GACGGCTGGA CGTGGAGCAC GACGAATGAT 
    GAATCGGAAG AAGACGAAGA GAGCTTGAGG TTGTCTAGAG CCCACCTCAG 
    AGCTTCCATA CTCACCTCGC TTCCATCTAC CGCCACAACA ACGCAATTCA 
    AGCT

AT1G09730.1

Model type
Protein coding
Short Description
Cysteine proteinases superfamily protein
Computational Description
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT4G33620.1); Has 1713 Blast hits to 1567 proteins in 224 species: Archae - 4; Bacteria - 15; Metazoa - 815; Fungi - 324; Plants - 268; Viruses - 7; Other Eukaryotes - 280 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09730.2

Model type
Protein coding
Short Description
Cysteine proteinases superfamily protein
Computational Description
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT4G33620.1).
Link
InterPro Scan - TAIR

AT1G09740.1

Model type
Protein coding
Short Description
Adenine nucleotide alpha hydrolases-like superfamily protein
Computational Description
Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G11930.1); Has 5950 Blast hits to 5719 proteins in 1218 species: Archae - 487; Bacteria - 4382; Metazoa - 139; Fungi - 81; Plants - 701; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00430.2

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
TRANSMEMBRANE PROTEIN C (TMP-C); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00440.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3741)
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1239 Blast hits to 1045 proteins in 162 species: Archae - 0; Bacteria - 74; Metazoa - 262; Fungi - 79; Plants - 239; Viruses - 0; Other Eukaryotes - 585 (source: NCBI BLink).
Link
InterPro Scan - TAIR