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54-1627-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26497624 [Map]; Strand: c
      • AT5G66320.1 - [+] show detail - GATA transcription factor 5
        Distance: 0; Region: intron1 (5UTR)
      • AT5G66320.2 - [+] show detail - GATA transcription factor 5
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-1627-1 - 5-prime edge 
    TTCTCGCCAC CGCTCCTTCC TCCCTCCTTC TCTCTGTATC AGGTACTTTT 
    TCCTAATTCC TGTCCAATTT TAGGGTTTTC TTTTAAGGGT TTCGTATGTC 
    TCTTTTCATG TTCTTTGAAT TTGCTTCGTT CGTTGCAGTT TTCATTTCAG 
    TCTCGTGACT GACTCTGTTT GTGGGTCGTT TTCGTAATTG AGTTTCCCCG 
    GTCGTCTGTT TTTTTTGGGG TTCGTGATTT CTTTTTTATT CCTTCTCTCT 
    CTCTTGGAAT TGCGAAAAAG AGGAACGTTT TTTTTTACGT TTCGTTTGAA 
    AAANAATGTG AATAAATTGG ACATAAGTAT TGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26497743 [Map]; Strand: c
      • AT5G66320.1 - [+] show detail - GATA transcription factor 5
        Distance: 0; Region: exon1 (5UTR)
      • AT5G66320.2 - [+] show detail - GATA transcription factor 5
        Distance: -66; Region: promoter
    Flanking Genome Sequence: 54-1627-1 - 3-prime edge 
    GGCGAGAAGA AGAAGAAGAA GAAGAAGAAA GAGATTAAAG ATTAAAGAAA 
    AGGGTCAAGA AGAGATGGTT ATGTGAGTTT GGTAAAGCAT TCAATTTGGT 
    AATCTCAGCC TCTCCCTTGG CGTACTAAAA ACTCCTCTTT TTCTTATCTC 
    TAGAAGAAAC GCTTTTTACT CTCTCTCTTT CTTTCTTTTA AAACATAAAA 
    AAGGGCAACC AAAAAAAAAG NGTTTTTTTT TTAAAANNGG AAATACCNNG 
    CCAANAAATN TNTAANTTTT NNGTTTCAGN AAAAAAAACC GGCCCTGTNC 
    ANTTCCNGNN ATAAAATAAA ATNNCCAC

AT5G66320.1

Model type
Protein coding
Short Description
GATA transcription factor 5
Curator Summary
Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.
Computational Description
GATA transcription factor 5 (GATA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 6 (TAIR:AT3G51080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66320.2

Model type
Protein coding
Short Description
GATA transcription factor 5
Curator Summary
Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.
Computational Description
GATA transcription factor 5 (GATA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 6 (TAIR:AT3G51080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR