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54-1643-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29834600 [Map]; Strand: w
      • AT1G79310.1 - [+] show detail - metacaspase 7
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-1643-1 - 5-prime edge 
    CTTNGATAAA ACTAACAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACTTTCATC GATCGTATCA GACTCTTGTC ACAGCGGCGG 
    GCTCATTGAT GAAGCTAAGG AACAGATCGG AGAGAGTACC ACGACGAAGC 
    CAAATCGAGA ATCCAAAGTT TCTTCTTTTG AATTCGAGTT TAAAAACNTG 
    TTTGCATAGC ATTTTTGTGA AACTGCTTGC TTTTTGTGGA ATCGGAAGTT 
    CTCATGTAGA GACGCGCGAG ATCGTAGAAG TAGGCGAGGG AGATGAAGTT 
    GTCAGATCAA GGTATCTGCC GTTGGAGAGG TTTATTGAAC TTCTCAAACA 
    ACAAACTGGG CAAGACAATA TCGAGATTGG GAAAATCAGA CCCACCCTTT 
    TTGATGTCTT TGGTGAAGAT TCGAGCCCGA AGATAAAGAA GTTCATGAAA 
    GTGATTCTTA CCAAGCTAAG GAAAACAAAT GACCAAAGTA CGCTCCTTGG 
    TNAGATCNAA NAAAGTGCTT GAACCANNCC NGNCCNNNNA CCNCNCNTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29834595 [Map]; Strand: w
      • AT1G79310.1 - [+] show detail - metacaspase 7
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-1643-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCNTC 
    TNACCTACGN CTGGAACNNG TTCCANGTGN CATCCCTGNA ATCATCACGG 
    TGGCAATAGC AGNACNCNNA NCANNGTACG ANNTATCGGA AAAAACCCTA 
    CCGCCTTTGN TTTATTGCCN TGNTNGACAT AATTNAAAAC GNTNCCNNNA 
    GANTTAACNG NTGNAACANN NGGGGANNNC CTATNCTGAA CGNATNTCTC 
    NGTTATAAAN NGANNACTAT GNTTTTCTTN GTTNAACTAN GGAACCNTNC 
    CNTAATAAAC TCTTACCAGG AATNGGATTC AAGTCGGAAG GAACAATACN 
    CTCATCAAAA CCTGTNTCAT CCTNTTCCCC TGTTTCCGGN GGGACTCTCG 
    NGCCGNGTCC GCTGTAATGC NCNAATAAAA CGTCNCCGGA TTTTGCTGGC 
    TTTATNANCT CCNACAAANC CTGACGGATG TTCTTTCCTG NGGGTNGAGN 
    GTAAAATTCG TCGGNGTCAA TCANCNCAGN GATNTCTTCC TCCGCNAATC 
    CGAACCGGTC AACGANACAC TTATGCATTN TATGGACGTN NTTGACCCAN 
    CCTTGNACCT CCTCCGNGGT TCCTGGATAN NNGATTCCTA TNAACANCGC 
    TNTTTTTGCC NTTNTTGCAA CCNTNAAAAN TTNTTNGNCG GGNAAAAAAC 
    TTCCNNNGAT NTAACNATTC TTNANTGGAT TTGGGATGAA NANTNNCNTT 
    NAATCNT

AT1G79310.1

Model type
Protein coding
Short Description
metacaspase 7
Computational Description
metacaspase 7 (MC7); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, male gametophyte, root; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 4 (TAIR:AT1G79340.1); Has 1196 Blast hits to 1169 proteins in 284 species: Archae - 7; Bacteria - 340; Metazoa - 0; Fungi - 299; Plants - 319; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).
Link
InterPro Scan - TAIR