1. Home
  2. Mutant Lines
  3. 54-1649-1

54-1649-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29869995 [Map]; Strand: w
      • AT1G79410.1 - [+] show detail - organic cation/carnitine transporter5
        Distance: -362; Region: promoter
    Flanking Genome Sequence: 54-1649-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC AGAGAATTGT GAAACTTGAC CACTCAACTC 
    TTAACATCTC GCCGATAATT TTTTGTTTTT GTTTTTTGTT TTTGTCATAA 
    TTCGCCAAGA AATTATGTTA TATATAATAT AACGAATAAA GAAAGGGGAC 
    TATCAAATTG AATAGTAAAA TAAATTATTA TAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29869941 [Map]; Strand: w
      • AT1G79410.1 - [+] show detail - organic cation/carnitine transporter5
        Distance: -308; Region: promoter
    Flanking Genome Sequence: 54-1649-1 - 3-prime edge 
    GCAACATGTG GAAGCATAAC GTACTTATCG TGGGCCACAC GTGAGCGGTA 
    GACTTCTCAA TTTGAGTAAC CAATTAAAAT GGGCTTTACT TAACGGCCCA 
    GTATGAATTT ATAAGCAGAA GTGTCCATGT TGATATGTCG CATGTACNTT 
    ACATCAGCAA CTATGTATTT ATATTGTGCT TCAATTATTA TTGGTCATAG 
    TTTAACACAA AAAGGCCCGC ACAGATACAA ATCTTAAACA GTTTGTTCAA 
    AAAGACAAAA ACAAACAAGA AAAAAACATT TTCTCATTGA TCATCAAAGA 
    TCAGATCTCT TGACCACACA TTATATATTT TCAAAAGTAC TAGTTGTTTG 
    TTTTTAATTT TGATGTAATA ATTCTCACAT TCTCAACAAG ATCGATCAAA 
    GTAAGCAACC ATGGCGGATT CGTTGGCACC ATTGTTGCCC ACCCACATTG 
    AAGAAGATGA AGACACTTCT TCACCTCTGA CTTTCGACAA GATCCTCGAG 
    AAAAGCT

AT1G79410.1

Model type
Protein coding
Short Description
organic cation/carnitine transporter5
Computational Description
organic cation/carnitine transporter5 (5-Oct); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter 6 (TAIR:AT1G16370.1); Has 11548 Blast hits to 11506 proteins in 1434 species: Archae - 261; Bacteria - 5062; Metazoa - 3508; Fungi - 1334; Plants - 912; Viruses - 0; Other Eukaryotes - 471 (source: NCBI BLink).
Link
InterPro Scan - TAIR