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54-1652-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19668316 [Map]; Strand: w
      • AT2G48080.1 - [+] show detail - oxidoreductase, 2OG-Fe(II) oxygenase family protein
        Distance: -1224; Region: intergenic
      • AT2G48090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 794; Region: intergenic
    Flanking Genome Sequence: 54-1652-1 - 5-prime edge 
    CTGGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATATA ATGAATGTAG TTTTATTACT TAATTTGAAT 
    TTAAATTGCA TAAGGGCCAA TCATGAGATT CGTCGTATTC ATTTTTGTTT 
    TTAATTTAAA TATACGATCG ATTTTGTCTA TTGTGCATAT TATGCATCTG 
    CTTGGAGTCA AACTTGACTC TTGATCGTCG GAAAGGGACT TCTCCATTTA 
    TGTATTATAA TGGACGTAAA CAAAAATTGT GAGTTATCGA CACAACTTCA 
    GAAACACATC TCATTTATGG TATATTGNGA ATAAACGAAT AAGTTATNCA 
    TTGGAAAAAT TAAATCAGTN GCTAGTAGAA ACATATATGA AAAATATACT 
    GCGACAGACA GTATATTAAC TGGGAAAGGA GAAAAACCGA TAAAGAAAGG 
    AAATNGTCCN NAGGAAANCA ATNNTATGTA ATTNGANAAA AGGAAATCTC 
    AACTGAATNT GNCCNNTTTT GGCTNAGGGG GCNNCCNATT NTTTAGAGGG 
    GGGNGGGCNT NANGANNAAA NGAAANNTTC NNGNCGNGNG AGGGAGGGNN 
    TNGATNCNNG GGGCGNNGNC CNGNNNTTTG NNANNNNANA ACCCCANCCN 
    NGCNTNGTNA NAAAAANNNG NGGGNGGGGG GNNNTTNNNN ANANANGGGG 
    NNNNCNNGGN GNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19625679 [Map]; Strand: c
      • AT2G47960.1 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF9...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1652-1 - 3-prime edge 
    TTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    TCAGGGTGAT GCGACTCTGC AAACCGTCTT TCCACGTCGA TCCTCCCCTC 
    CGCATTGACC CTTTCGATCT TCTCGCCGGC GAGGATTTCT CCGACGATCC 
    CTCTTCCGCC TCCTTGTTCC GCCGCCACAG TATCTTCTGC CGACGCTGTC 
    GA

AT2G47960.1

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF974 (InterPro:IPR010378); Has 285 Blast hits to 284 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 68; Plants - 32; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48080.1

Model type
Protein coding
Short Description
oxidoreductase, 2OG-Fe(II) oxygenase family protein
Computational Description
oxidoreductase, 2OG-Fe(II) oxygenase family protein; BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02940.1); Has 179 Blast hits to 160 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 24; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, root, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR