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54-1654-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108298 [Map]; Strand: c
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: intron1 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-1654-1 - 5-prime edge 
    GAATCAGACA GACAAAAAGT GTCTGGATCC GTAGAGCAAA GTGTTGTCGT 
    GTCTTTGACA AAGTTCTTTG TTTGCCTAAA CCAATTTGTT CATCCGATAG 
    AATGAATTGC ATTCCGTTGT TACTATCATC CAAACCGGAG ATGTCAAGCC 
    CTAACCCTCA AGTAGTATTT CTTAGAGAGC CATGAATTGT TTGTTTAGAT 
    CCAATTAGAA GAAGGNTTAA TTGACTGTGA TGATTGTTTG TGTTTTTGGG 
    GGCAGGACCA GGAGGCGCCC ANAGGGAGGA TGCNNGAGAT ANAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108422 [Map]; Strand: c
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: intron1 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-1654-1 - 3-prime edge 
    GTTATGCTAA GCACACCACT GTTTCATTAA CAATGTTTTC GTTGACTCTA 
    TTTAACTACT TTATTTTCAA TGTTAGGATT TTTAAAATGA TAAAGAAAAA 
    AGGAGTAGAA CAGAGAATAG TCGATTGAGG TTACCTGAGA ATTGCGCCAG 
    AATAAGAGAG AAGAGAAAAA CGACCCTATT GTCATCAGAA AGTGAAGATC 
    TCGACTAAGA GATGAGATGA GGTTAAAAAG AAATGTGGAT CTCGAAACTT 
    AGGAGTAAAA CAGAGGAATT GATCTAACGA AGACTATAGA TAAATAGTCC 
    GATGAGGAGG AGGTAGAAGA CGCGTTGTTA AACTTGCGAG TTTTGTTTTG 
    TTTCCCAACT TGACGGTTTG ATAGAAGAAT AAGAAGAAAA CAGAGAGAGA 
    CATGATTAGA AACTCCTCTT CCTCTTGAAT TTTGACTTTT GACTTTTCAG 
    TTATCGCCGG TCTGATATGG CCTTCGTCTT TCTTCTCAGC CGCGTAGGTC 
    CCACTTTTTA GGAAGGTTCG GAAATCCAAG CCCGTAAGTA TATTTTCTCT 
    GTGGGCTTAC CTTACTTATT AGGCCTTATT ATGGGCCTTC CCTGCTCGTT 
    TTGTCACATG ATCCAGTTTT CAAACTACAT AGGGGGGTTT ATAATTTCTT 
    TTTTGGACTT TAACTATTTA CTAATATGTA TCCATTACAC ACATATCCAG 
    AGCCAGCCCC TTTCTTAAAG CCCA

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR