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54-1668-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 121791 [Map]; Strand: c
      • AT4G00270.1 - [+] show detail - DNA-binding storekeeper protein-related transcriptional regulator
        Distance: -3214; Region: intergenic
      • AT4G00280.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane...
        Distance: 618; Region: intergenic
    Flanking Genome Sequence: 54-1668-2 - 5-prime edge 
    CTTGGAAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC CGAGGTATAT GTATTATCAT TCAAGCTTAA 
    AGATTTTTAT AATATATTAA GATAAGCCAT ATTCATCGAT GGTGTTTTTT 
    TCAATGTGTT TTGTCAATTG GAGCTGAAGG ATGGAGATTA AATTGATGCA 
    ATGTTGTATC AACAAAATGG TTATGGTCCT CTTCTATAAG TATTTAGAGT 
    TTGAATGTTT CAGGTGTGAA TGTCAAGTAG AAGACTACAT GCACGAGTCA 
    ACCGTTCTTT AACATAAATC TTAATTATAA ATATTAAAAG AAAAAATAAA 
    TACATGAATG GTGTCTTGGT ATTAGGAGCA CTACAGAGAC AACTCAACTG 
    ATTTTAAATA ACAAAAATCT TAAATATAAA TCTTAAAACA AAAAAAAATA 
    CNAAAATGAT TTTTTGATAA CATGANCATT ATTTGCNCAT NTNTCAACTG 
    ATTTTAAATA ACCAAAATTT TNGGTGNGGA TATTAAANAA AAAATNNNAA 
    TNANNGAATG ATACCNNCCC GGGCCGTNNA ANAAANANCC CCNNGGGGGN 
    NNAAANCNCC CNCNNNNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 121795 [Map]; Strand: c
      • AT4G00270.1 - [+] show detail - DNA-binding storekeeper protein-related transcriptional regulator
        Distance: -3218; Region: intergenic
      • AT4G00280.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane...
        Distance: 614; Region: intergenic
    Flanking Genome Sequence: 54-1668-2 - 3-prime edge 
    NTTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    TCAGGTGTAT GATATTCTCG AATTCAAAAT AGAAAGCGAA ATGTGTTCCA 
    CTCTACACCT CTCATTTTGG TGTAAAGTCC CATCAATTTA AGAAGCTTCG 
    CCTTTCTTCT CACCTTTATA TTAAGTCATG CATGCTAATG TAG

AT4G00270.1

Model type
Protein coding
Short Description
DNA-binding storekeeper protein-related transcriptional regulator
Computational Description
DNA-binding storekeeper protein-related transcriptional regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT2G25650.1); Has 282 Blast hits to 277 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 255; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00280.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase protein (TAIR:AT2G19210.1); Has 19 Blast hits to 19 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR