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54-1692-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17986679 [Map]; Strand: w
      • AT4G38430.1 - [+] show detail - rho guanyl-nucleotide exchange factor 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1692-1 - 5-prime edge 
    CTTTGAGCCG TTATTAGATC TCTGCCGCTT CAATAATGGG GAGCTTATCT 
    TCTGAGGAAG ACGACGAAGT CTCTTCCGAG AGATGCGGAA GTTACAGTCC 
    CAGCGCCGAC ATTAGCGAGT CCGAGAGTTC CAGCAGCTTC TCCTGCCACC 
    GCTTCGACGG CGAGGGTGCC TCTAGCTCCA TCCCTTCTTC CCCTCGAGTT 
    GTCGCTGGTA GAGGATTTTA CTTCCCGGCC CCAGTCATGC TTCCGGTGAT 
    CGGCGGCAAA GATGTGGTCT GGGATGACAA ACAACCAGAC AACGATTTAT 
    CCGGTATAAA AGTTTCCAAA TTTGACCTCT TTTGTAAACA TTGATGAACA 
    CTAGGATTCA ATTTCCCTTT TGTTTCCTAT TGGGTTTCAG AAATTGAGAT 
    GATGAAGGAG AGATTTGCTA AGCTACTTCT CGGGGAAGAC ATGTCTGGTG 
    GAGGTAAAGG GGGTTTGTAC GGCGCTTGCT ATCTCCAACG CCATCACCAA 
    TCTCTCTGGT ACCATCTCAA TCTTCTTCCC TTTTTGTTAG TTGGTATATA 
    TAGTAAGGGG TTTCTAGTTT TTTAATAAGG CTAGTGTCCA CACAGCGACT 
    GTGTTTGGCG AACTATGGAG GCTTGAGCCT CTTGCTCCTC ANAAGAAGGC 
    CATGTGGCGC ANAGAACTTG AGTGGCTGCT CTGTGTTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17986563 [Map]; Strand: w
      • AT4G38430.1 - [+] show detail - rho guanyl-nucleotide exchange factor 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-1692-1 - 3-prime edge 
    GCTCAAAGAG TCCACATTTG GGTAAAGAGA CAGACAGAGA AAGGAAGAAG 
    AAGGAAGTGG ATGTGATGAT GATGCTTGTT TGATAAAAAG CAAAGCTCAG 
    AGAGAAAGAG AGAGAGAGAT GAGAGATAAC AAATAAAAAA GACTCCTTTC 
    ATTTCCTCAC TCACACTCTC TCTCTTCTTT TCTCTCCCAT CCATCCATAC 
    TCACGGCGTT ATCCTCTGCC GTTAGGGACA GGTATGAGGT TGGTAACAGA 
    TAAACCGTTA ACTCACGGTC GTCACATTTT TTAACGGCGA GATTAAATTA 
    TATCCCACGG CCGTTCTCAT AAGAGGAGCA TGCGCTTGTG TTATATCAAC 
    CGTTGGATAT TAAAAGTGAA CCATCAGGAT CTTTTCTACA GAGCAGAATA 
    GAGAATCTCG AAGCGACCGA GAAAATAAAG AAAGGCTGAC ATTGTGTGGA 
    CTAGAAGTAT TCCTTGTCGG ATCATCAGAC TCTCTCGTAC CACACCGGCC 
    TGAACTACGT TGCACCATAT CTATCCTCGT GATTTTACGC CCACGTGTAT 
    TACGCCCATT CGCCTGATCT ACACTGTCCA TAGTATTCTG GCGTCATTAA 
    AGTATTCACA TCGTACGGTC TAGATTGCGT TTGGCTTACT TATTTCGTGG 
    ATTCCGCTGT TTTCGGNTAT GGTTTTTTCA CGCAACGAAT CTAAGCCGTT 
    GATTATAT

AT4G38430.1

Model type
Protein coding
Short Description
rho guanyl-nucleotide exchange factor 1
Curator Summary
Member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily, also known as DUF315). Interacts with ROP1 but the whole protein lacks Rho guanyl-nucleotide exchange factor activity in vitro. The DUF315/PRONE domain is sufficient to confer RopGEF catalytic activity.
Computational Description
rho guanyl-nucleotide exchange factor 1 (ROPGEF1); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 7 (TAIR:AT5G02010.1); Has 308 Blast hits to 304 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR