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54-1735-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1237382 [Map]; Strand: c
      • AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1735-2 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTG GTAAGTTTAC GTTCGGAATG AACCCAAGCA 
    ACCGCATAAG TCTTTGTCTT GCGTGCGACG GGAGCCAAGT CCTGAGCTGA 
    TATTATGTTA AGTTCTAGCA ACTGAAACGA TGGGAACATC ATCGACATTG 
    TGGATCAATA GAGTGATTTT ACATTAAAAT CTTTTTGTTG GATTCGAGGG 
    GACCGGAGAA TTGCGAGAGG GAGAATGAGA TCTCTCTCGC AATTCTCAAT 
    TCAAAATTCT CAAAATTCTG AGAAGTGAAT GATGAATGAA GAAGAAGGTA 
    GATTGTTTGA TTGGTGGTGG CAATTTCCGA AAGGAGGGAG AAAGGTAATA 
    ATAACCATTT TGCTAAATTT GGTTTTGTGT ATGTGAGAAA GACAACGAGT 
    TTATTAGGAG GCGTGTGTTG TTCTTCAGCT GAAGATTGCT ATTTTAGGAG 
    ACGTTCGTGA GGATCAAGTT AGCTTTGGTG AAGAACTCTT TCCAATTTCA 
    ACTTACGTAT GTGTCCTTTT GATTACTGAA TTGTTGTCTG GTTTTGCAGA 
    AATAAGAATA ACAAACAAGG TGAATAATTT TTAATACCAT TAACATTTAG 
    ACTTTTTGAG TGTAAGGATT AAGCAAGTAA CACGTGTTAG CTCANTCTTA 
    AAATAGTTCA TGATCCTTCA TAATAACAAT ATCTTTTATT TTTCTTCTCA 
    AAATATATA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1237387 [Map]; Strand: c
      • AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1735-2 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ACCCGTGTCG ACTACAATGG CGGAACAAAC CCAACTTGGA ACGACAAATT 
    CGTATTCAGA GTCAACGAAG AATTTCTCTA CGCTGATACT TCAGCAGTGG 
    TTATCGAAAT ATACGCCTTG CATTGGTTCA GAGATGTTCA TGTAGGAACA 
    GTTCGTGTCC TCATTAGCAA CCTCATTCCT CCTAATCGCC GTCCAGGATA 
    CAGAACCAGC AACAATGAAT ATCGTCGTAC CCCACCTCCA GGAATGAGAT 
    TTGTTGCGCT TCAAGTTCGT CGTACTTCAG GTCGACCTCA GGGGATTTTG 
    AACATTGGTG TTGGATTAAT TGATGGTTCT ATGCGGAGTA TGCCGCTTTA 
    TACGCATATG GATTCATCTG CTGTGGGATA TAGAGATTTG CTCGGAGAAG 
    AAGATCATCA TCTACAACAT TTGCATTTAA ATAGCAACAA AGGGAGCTCA 
    AAGAATCCAC AATCTCCATC TTCTCGACAG TACCAATCCG TAATCTCAAG 
    GCCTGAGCTC CGTCGTACGA AGAGCGATAC AAGTTCTATG GTTGTTTCGG 
    ATCTTCTTAG CAGGGCTGAA CGGGAGTCGT TTAGCTAATA GACAACCAGC 
    GAGTGCAATA GTGAGCAGTG AATCTGAAAC TCTTCCCACC ACGACAGATT 
    CTGATGAGAA AAAATCGAGT GAGTATACAC CTNCTAGTAA AAACCCTTAG 
    AGTTCCAAG

AT1G04540.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
Calcium-dependent lipid-binding (CaLB domain) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G33320.1); Has 556 Blast hits to 454 proteins in 75 species: Archae - 0; Bacteria - 32; Metazoa - 92; Fungi - 46; Plants - 336; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Link
InterPro Scan - TAIR