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54-1741-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9521496 [Map]; Strand: c
      • AT4G16920.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon5 (CDS)
    2. Chromosome: 4; Position: 9541487 [Map]; Strand: c
      • AT4G16950.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon5 (CDS)
      • AT4G16950.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 54-1741-1 - 5-prime edge 
    TCAGCTACTT GGAAGTCTCA AGGAGATGAT TCTGAGTGGT TCCAAATATT 
    TGAAAGAAAT TCCAGATCTT TCTTTAGCCA TAAACCTCGA GGAACTAAAT 
    CTTGCTCTAT GCGAATCTTT GGTGACATTT CCTTCCTCAA TTCAGAATGC 
    CATTAAACTT ATCTTTTTAG ATATGAGTGA TTGCAAAAAG CTAGAGAGTT 
    TTCCAACCGG TCTCAACTTG GAATCTCTCA AGTACCTCGA TCTCACTGGA 
    TGCCTGAATT TGAGAAATTT CCCTGCAATC AAAATGGGAT GTCCATACTT 
    TCTGCAAGAT AGAAATGAGA TCGTGGTAGA AGATTGTTTC TGGAACAAGA 
    ATCTCTCTGG ACTTGATTAT CTCGACTGCC TTATGAGATG TATGCCTTGT 
    GAATTTCGCC CAGAATATCT CACTTTTCTC GATGTGATCG GCTACAAGCA 
    TGAGAAGCTA TGGGAAGGCA TCCAGGTACA TTGTTAATGC TATGCTGATT 
    TTTGTTTTCC TTCTATTATA TAACTAATTA AGTATACCCA AATTTGTTTT 
    TATGGCTTGT GGTCGATCCA CGGTTATTAT GTCTTACATA CATACATAAT 
    AATGGTTAAT TATAATTTTA AACATATCTT ATATAATAAA TTAAAGGNTT 
    TTTTCATACT CATGCTCTAA AAAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9535409 [Map]; Strand: c
      • AT4G16940.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 54-1741-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGAT 
    AACAAAATGA ACATTTTAAA CAGATTTATT TTCGTTTTTC TAACATATTT 
    ATGATCACTA ATAGAATTAG TACCTGAGTT CCATCCCACA GCTTCTCAAG 
    GTCACTATTC ACCATTTTGA GTTCAACCAG ATACTCAGCC TTAAAATTAG 
    AAGGCAAACG CTTCAATGGA TAATTATCCC ACCATAGCCA TTTGAGTTTA 
    CGTGGCAAGT AAACGAGGCC GTTAGGTAGA CGCATTCTGG TTTCTCTCGG 
    TTGCCACCAT GAACGATATT GAATATTTAG AAATTGGAGA TTAAGCATGC 
    CTTGGAACGA GTTTTCATCT ATTGAAATAA ATGGCTTATG GATTTGTGAA 
    TCTGATGACG CGTTGAAATG TATTCCGAGC AATTTTTCAG TGCCCTGACA 
    TAAAAACCAC CAAAGAAAAC TGCTATCCTC CAGTACCAAA CTAAATCAGT 
    TTTTTTAACA TCAAAAGACA ATCGTTGAAT GAATATAAAG TGGTGCATTA 
    AGCTGCAAGA ACTTACGGTA TTATCGGTAA ATACGTCTAG AATTTCCTCA 
    GCATTCTCCA GAAATCGACG TTTTCCAGGA TTACCATTAG ACTCTTCACG 
    ATCAATTTCT GTAGCCAACT TCTGTAGCAA ATTGTGCATC TCTATAGTAT 
    CATTCCGGTG TTATACGTAT GAGAGACTTA TCATGCAACG TTTTGA

AT4G16920.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16950.2); Has 33072 Blast hits to 18315 proteins in 784 species: Archae - 24; Bacteria - 2125; Metazoa - 2462; Fungi - 169; Plants - 26873; Viruses - 34; Other Eukaryotes - 1385 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16940.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16960.1); Has 22000 Blast hits to 14952 proteins in 582 species: Archae - 12; Bacteria - 1007; Metazoa - 1676; Fungi - 89; Plants - 18365; Viruses - 12; Other Eukaryotes - 839 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16950.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33222 Blast hits to 18539 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2568; Fungi - 207; Plants - 26793; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16950.2

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33205 Blast hits to 18535 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2566; Fungi - 207; Plants - 26778; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link
InterPro Scan - TAIR