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54-1778-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16321770 [Map]; Strand: w
      • AT4G34065.1 - [+] show detail
        Distance: 281; Region: intergenic
      • AT4G34070.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: 1325; Region: intergenic
    Flanking Genome Sequence: 54-1778-1 - 5-prime edge 
    CTTGGATAAA ACTAACAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACTTACTTT ACTAAACCAT TTGATTGCCA AAGTATATGC 
    TTCATAGTAT TATCTAATGA TGATATGAAT ATCTATTTGT GGCAGTAAAT 
    TTCAGAAACT TAACAGAGCT GGTCCAAGAT C

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16312090 [Map]; Strand: w
      • AT4G34050.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: 54-1778-1 - 3-prime edge 
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CTGCTTAACA CAAATACATA AAAAGGTCCA TTTTAGTGGT TGGTGAAAAT 
    GCGATTGAAA GGTATAAGAA GATGGAAAGT AATCCACTGT GGACAAACTC 
    AGAGTAGGGA GGAGTCAAAT CAACTGATCC GACGGCAGAT AGTGATTCCA 
    TCACCAACAG GGAGCATACA GATC

AT4G34050.1

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
caffeoyl coenzyme A O-methyltransferase 1 (CCoAOMT1); FUNCTIONS IN: caffeoyl-CoA O-methyltransferase activity; INVOLVED IN: coumarin biosynthetic process, response to cadmium ion; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26220.1); Has 5458 Blast hits to 5455 proteins in 1478 species: Archae - 33; Bacteria - 3172; Metazoa - 243; Fungi - 122; Plants - 614; Viruses - 0; Other Eukaryotes - 1274 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G34065.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT5G06265; hyaluronan mediated motility receptor-related
Link
InterPro Scan - TAIR

AT4G34070.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: TLD-domain containing nucleolar protein (TAIR:AT5G06260.1); Has 171 Blast hits to 168 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 68; Fungi - 2; Plants - 46; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
Link
InterPro Scan - TAIR