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54-1780-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3952524 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -1922; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4658; Region: intergenic
    Flanking Genome Sequence: 54-1780-2 - 5-prime edge
    CAAGCTACCA NNNCGGGCCG TNAGACCACG CGTAGCCCTA TAGCTTTGTA 
    TGTTCTAACA AGGAAACACT ACTTAGGCTT ATAAGATCAG GATGCGGTTT
    AAGTTCTTAT ACTCAATCAT ACACATGACA TCAAGTCATA TTCGACTCCA
    AAACACTAAC CAACCTTCTT CTTGCTTCTT AAAGTTTTCA TGGTTTAGCC
    TAAGTCCATA TGAGTCTTTG GCTTTGTGTC TTCTAACAAG GAAACGCTAC
    TTAGGCTTTT AAGATCGGGT TGCGGTTTAA GTTGTTATAC TCAATCATAC
    ACATGACATC AAGTCATATT TGACTCCAAA ACACTAACCA ACCTTCTTCT
    TGCTTCTCAA AGCTTTCATG GTTTAGCCTA AGTCCATATG ATTCTTTGGC
    TTTGTGTCTT CTAACAAGGA AACTCTACTT AGGCTTTTAA GATCAGGTTG
    CGGTTTAAGT TCTAATACTC AATCATACAC ATGACATCAA GTCATATTCG
    TCTCCAAAAT ACTAACCAAC CTTCTTCTTG CTTTTCAAAG CT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26283332 [Map]; Strand: c
      • AT5G65700.2 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G65700.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1780-2 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTCAGCAGCT CTCGAAGATT GATTTCAGCC ACAACTTGTT CTCCGGTCGA
    ATCGCGCCGG AGATTAGTCG TTGCAAGCTC TTAACGTTTG TTGATCTGAG
    CAGAAACGAG CTCTCCGGTG AAATCCCAAA TGAGATCACC TGCTATGAAG
    ATATTGAATT ACTTGAACCT GTCGAGAAAC CATCTGGTTG GATCAATCCC
    TGGTTCAATC TCGTCAATGC AGAGCTTAAC ATCTCTTGAT TTCTCTTACA
    ACAACCTCTC CGGTTTAGTT CCGGGAACAG GACAATTCAG TTACTTCAAC
    TACACATCGT TCTTGGGTAA TCCTGATCTC TGTGGTCCTT ATCTTGGTCC
    TTGTAAAGAC GGTGTTGCTA AAGGAGGTCA CCAGAGTCAT AGTAAAGGAC
    CTTTATCAGC TTCTATGAAG TTATTGCTTG TTCTTGGACT ACTTGTTTGT
    TCGATTGCGT TCGCGGTAGT AGCCATAATC AAAGCTAGAT CATTGAAAAA
    GGCGAGTGAG TCACGGGCTT GGGAGGTTAA CAGCTTTCCA GAGACTAGAC
    TTCACGTGTG ACGATGTCTT GGATTCTCTC AAAGAAGACA ACATTATAGG
    CAAAGGAGGA GCTGGTATTG TCTATAAAGG CGTAATGCCT AATGGTGATC
    TAGTCGCGGG TTAAAGACTC GCTGCAATGT CTCGTGGATC TTTCCATGAT
    CACNGGTTCA ACN

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G65700.1

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Curator Summary
Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.
Computational Description
BARELY ANY MERISTEM 1 (BAM1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT3G49670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65700.2

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Curator Summary
Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.
Computational Description
BARELY ANY MERISTEM 1 (BAM1); CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT3G49670.1).
Link
InterPro Scan - TAIR