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54-1803-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21231828 [Map]; Strand: w
      • AT3G57380.1 - [+] show detail - Glycosyltransferase family 61 protein
        Distance: 99; Region: intergenic
      • AT3G57390.1 - [+] show detail - AGAMOUS-like 18
        Distance: -1873; Region: intergenic
    Flanking Genome Sequence: 54-1803-1 - 5-prime edge 
    CTAATGACAC AAATTTACAA GCATTTGTTC TGTATAGAAA TCACTAACCG 
    GAGAATACCA ACTAAACTGA GTTTTTTTCA CACTTTTTCC ACTGAGTTCA 
    TACCACATTC AACNTGGGTC TAAGGGCCCA AATATTATTT GCTTTATAGG 
    CCCAAAGTCC CAAACATGCT AATCTTTCAT GATACCTCCT CCATACGTCT 
    TTTTTACAAT TTTGTGTGTT TTACAAAAAA AGATTTTGCT TAGTAATCTA 
    TNTGTTAAGA TTTTTTCCGT TTCTATTTGA TAAGAATATA TTCGATATAT 
    TTTCAATTTA TACTGTATAG AGTAGCTTGT TATAATTATC ATCAAATTTC 
    ATTGTTTTTT TCATAAACAA ATATGATTAA AATTGATCTA GAAGTCTGCA 
    CGAAGAAAAG TAAAATGGAA ACAAATNGCA GATTTGCATG TAATTACNAC 
    AAGTGGCTCA TNCTCNTTTT TAGCATGTGA CAGAAGTGTC TGGTTANTGG 
    GAAAAAAAAA AATGGNNCTN TNTTTTNTTN AAAAAAAAAA CCCCCCTTTT 
    TTGANNNNNA NCCNAAAANA GGGNNNTNGG GGANAAAAAA NGGGNTNNNN 
    TNNNTNNNGG GGGGGGNGNG GNNNNNTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21231712 [Map]; Strand: w
      • AT3G57380.1 - [+] show detail - Glycosyltransferase family 61 protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 54-1803-1 - 3-prime edge 
    GTCATTAGGT ACGACACAAA AGAAAGTCTA TGCATTCTCT GTACAAAATG 
    TTTACATCTC CAAAATTATA TTATACAATC TCAAACCCCG GTTTAATTGG 
    TAACATCCGG TTTGTGACTG ATATACACCA GTCCAATTCG CTTCATCGAG 
    AAATCATAAG CACGAGACAA CGGTTTCCTA AATCTTTTCA AATCAAGCT

AT3G57380.1

Model type
Protein coding
Short Description
Glycosyltransferase family 61 protein
Computational Description
Glycosyltransferase family 61 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, flower, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Glycosyltransferase AER61, uncharacterised (InterPro:IPR007657); BEST Arabidopsis thaliana protein match is: Glycosyltransferase family 61 protein (TAIR:AT2G41640.1); Has 645 Blast hits to 645 proteins in 97 species: Archae - 0; Bacteria - 36; Metazoa - 169; Fungi - 16; Plants - 385; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G57390.1

Model type
Protein coding
Short Description
AGAMOUS-like 18
Curator Summary
encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.
Computational Description
AGAMOUS-like 18 (AGL18); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 15 (TAIR:AT5G13790.1); Has 6796 Blast hits to 6793 proteins in 870 species: Archae - 0; Bacteria - 0; Metazoa - 633; Fungi - 312; Plants - 5770; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link
InterPro Scan - TAIR