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54-1814-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25753169 [Map]; Strand: w
      • AT1G68580.1 - [+] show detail - agenet domain-containing protein / bromo-adjacent homology (BAH) domain-conta...
        Distance: 0; Region: intron1 (5UTR)
      • AT1G68580.2 - [+] show detail - agenet domain-containing protein / bromo-adjacent homology (BAH) domain-conta...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-1814-1 - 5-prime edge 
    GGCTCGATTC TATTGTTTCT GGTAATTTTT CTTAATCTAT CTTTCGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25753053 [Map]; Strand: w
      • AT1G68580.1 - [+] show detail - agenet domain-containing protein / bromo-adjacent homology (BAH) domain-conta...
        Distance: 0; Region: exon1 (5UTR)
      • AT1G68580.2 - [+] show detail - agenet domain-containing protein / bromo-adjacent homology (BAH) domain-conta...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1814-1 - 3-prime edge 
    ATCGAGCCAA AGCGCAACAT CATCTTTAGA ATTAAGCTTT TTCAAGACAG 
    AGCGATTCTT CTTCAAAGCG TATCTAAAAG ACATGCGTTT AGAATTCTTC 
    AACCTCCCAA TAACAGCTAG ATC

AT1G68580.1

Model type
Protein coding
Short Description
agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein
Computational Description
agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT5G55600.3); Has 202 Blast hits to 186 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G68580.2

Model type
Protein coding
Short Description
agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein
Computational Description
agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT5G55600.3); Has 284 Blast hits to 251 proteins in 24 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 275; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR