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54-1833-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 109564 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -761; Region: promoter
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -953; Region: promoter
    Flanking Genome Sequence: 54-1833-1 - 5-prime edge 
    TTTGCATCTT TTACCAACCA ATAATAATCC TACTTAAAAA CTGGAATCCA 
    GATATGTGTA GAAAAAAGGT AGACTACTAT AATTGTGTAT GGGTGGAAAT 
    GGATATACGC TACNTGAGTA GGGGTTAGTT GGTCCACTTT GGTGGTGGGC 
    TTAAAAATTG GAAACCTCTT TTTTCCTCAC AATTACACNT TTTATGTGTG 
    ATTTTTTTTT TNGTAAANNA NGNGGNATTA ATTNGCCNNC CCTTTNGCNC 
    TCNTNANCNC CCCANTTTNA NTTNGATNGG GCAAAANNNT GTNTTTTTTA 
    ANAAAAAAAN ANCNNANCGG NTTNAATTTT AAAGGTTTNG GTTTTNAANG 
    GNANCCNCTN ANCNNTTTAA ANCAGTNTAA NCNGTTNGNC NTTNNCCAAT 
    CNNAAANTNG TTNCCAAAAN CGTTNNAAAA AGTTTNNTTN TNANNTTTTT 
    NGNNCAGTTT TTTNNTNCAG NTTTTTTNAA NAGTTTNGCC CTNTNCCNAN 
    AAAATNAANA NCTAAAAANC TNGCCCAGTT TTNANTTNCC AANNAAANNT 
    TTTAATTTTT TTAATTNTTA AGGGATNNAA ATNTNNAATT TAAGGGTTAA 
    AAGGTAAAAA AAAAAAAAAA ANAGGGCCAA TAAANANAAA AAAAAAAGGC 
    CAANAATCAA ANTCCATNTN GAATGTTTGG ACAACCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 109448 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -645; Region: promoter
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -837; Region: promoter
    Flanking Genome Sequence: 54-1833-1 - 3-prime edge 
    GATGCAAAGA ATATGAGAAA AGGTCTAATT GCGTGCTCCA TAAACCCTTA 
    TTCTAGTTCA ACCATAATTG TCAGTCAATA GAAGCAAGAT AATTTGAACG 
    TCCAAGTCAT CATCATCTTT TTTTTTCTTT CTGAAATTTC GTTTTACAAT 
    AAACAAAGAA AGGTTCCGAG TCCTCAAGCA TCTCTCACGT CGGAGCAAGT 
    TGCCATGCAC TCTCCAAAAT AAAATAAAAA ACAGACAAAG ACTTTAGACT 
    TGNGACTTTT CGACCTCATT ATGTACTTAC TTACTTCATC TTCTATTTGG 
    CACCCACAAA CAGTAGTTTC CACTTTCTTC CTCAATAAGT TCCATTTTTG 
    GATTCTTTCC TATTTTTACA CAAATTTGTT GTATTCTAAA AAGTTATATA 
    TTCTATTTGC TGGGCTTTAN ATATGGGCTG GCTCTGGATA TGTGTGTAAT 
    GGATACATAT TAGTAAATAG TTAAGTCCAA AAAAGAAATT ATAAACCCCC 
    TATGTAGTTT GAAAACTGGA TCATGTGACA AAACGAGCAG GGAAGGCCCA 
    TAATAAGGCC TAATAAGTAA GGTAAGCCCA CAGAGAAATA TACTTACGGG 
    CTTGGATTTC CGAACCTTCC TAAAAAGTGG GACCTACGCG GCTGANAAGA 
    AAGACGAAGG CCATATCANA CCGGCGATAA CTGAAAAGTC AAAAGTCAAA 
    ATTC

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR