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54-1847-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23218746 [Map]; Strand: c
      • AT3G62760.1 - [+] show detail - Glutathione S-transferase family protein
        Distance: -500; Region: promoter
      • AT3G62770.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: exon4 (3UTR)
      • AT3G62770.3 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 54-1847-2 - 3-prime edge 
    TTGACGAGCC GTGAATCAGT TTTGGTTAGT GATAAAAGGT TTTACAAATT 
    ATAGGACGAC CCATCATTAT TATATACACA AAACTATACA CCAAATCTCA 
    CCGCTTAAGT AGCAGAGAGA TATAAAGAGA GAGAAGGAAC AAAAGAGTAT 
    AAGTAGTAAA GCT

AT3G62760.1

Model type
Protein coding
Short Description
Glutathione S-transferase family protein
Curator Summary
Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).
Computational Description
ATGSTF13; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase 6 (TAIR:AT1G02930.2); Has 15143 Blast hits to 15132 proteins in 1449 species: Archae - 0; Bacteria - 8090; Metazoa - 2263; Fungi - 919; Plants - 1235; Viruses - 0; Other Eukaryotes - 2636 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62770.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Curator Summary
Required for autophagosome formation during nutrient deprivation and senescence.
Computational Description
AtATG18a; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, leaf senescence, response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 1516 Blast hits to 1443 proteins in 266 species: Archae - 0; Bacteria - 93; Metazoa - 578; Fungi - 450; Plants - 210; Viruses - 2; Other Eukaryotes - 183 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62770.3

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Curator Summary
Required for autophagosome formation during nutrient deprivation and senescence.
Computational Description
AtATG18a; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, leaf senescence, response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 213 Blast hits to 211 proteins in 57 species: Archae - 0; Bacteria - 30; Metazoa - 48; Fungi - 45; Plants - 63; Viruses - 2; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR