1. Home
  2. Mutant Lines
  3. 54-1865-1

54-1865-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12945194 [Map]; Strand: w
      • AT4G25290.1 - [+] show detail - DNA photolyases;DNA photolyases
        Distance: -200; Region: promoter
      • AT4G25300.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G25300.2 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-1865-1 - 5-prime edge 
    NGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTCA ACTGTGACTG TCTTCATTAG ATTTGAGACT 
    ATCTATTTAC ATTCTGATTA TTTCTTAAGA AGAAACGGCC ATGGAAGTCA 
    AAGGAGCCAC CCGGAGCTCT ATCATAGTTC CTTCTGTTCA AGAGATGGTG 
    AAGGAGAAGA TGATCACGAC GGTTCCTCCG AGGTATGTAC GGTCTGATCA 
    AGACGTAGCT GAGATAGCCG TTGATTCTGG TCTAAGAAAC CAGATCCCAA 
    TCATAGACAT GAGTCTTCTG TGTTCTTCAA CCTCCATGGA TTCCGAGATT 
    GACAAGCT

AT4G25290.1

Model type
Protein coding
Short Description
DNA photolyases;DNA photolyases
Computational Description
DNA photolyases;DNA photolyases; FUNCTIONS IN: DNA photolyase activity; INVOLVED IN: DNA repair; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G36530.1); Has 6717 Blast hits to 6715 proteins in 1229 species: Archae - 120; Bacteria - 4210; Metazoa - 285; Fungi - 40; Plants - 525; Viruses - 0; Other Eukaryotes - 1537 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G25300.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G25310.1); Has 8488 Blast hits to 8445 proteins in 990 species: Archae - 0; Bacteria - 1083; Metazoa - 108; Fungi - 972; Plants - 4966; Viruses - 0; Other Eukaryotes - 1359 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G25300.2

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G25310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR