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54-1893-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 344631 [Map]; Strand: w
      • AT2G01800.2 - [+] show detail - COP1-interacting protein-related
        Distance: 0; Region: intron3 (CDS)
      • AT2G01800.1 - [+] show detail - COP1-interacting protein-related
        Distance: 0; Region: intron3 (CDS)
      • AT2G01800.3 - [+] show detail - COP1-interacting protein-related
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 54-1893-1 - 5-prime edge 
    CTCACCACTT TCAAGGCCTT AAGAAAAACA GATATAACAA CACAACAGGT 
    AAATAAACTG ATACTCTTCA ATAACATGAT ATAGACTATT CAATAACAGA 
    GGTTACCTTT TGCTTCTGTT GGAGTCTCTA TGGAGGGTTT CTTTATACTT 
    TTGTTGTCAC TTTTCGATTT TCTCTTTCTT GCTTTCTTCT CAACAACTTN 
    ACCAATCTGN AGNTCACCTT TNTCCTCNAC NCNTNCTANG NCNAANCANN 
    CCNGGGNGNN NACCACCCNN NCCNNNNNCN CNCGTGNNNN NNNGGGNGGG 
    NGNGTTTCTC CCCCNCGNNG GGCCCCCNCC CCCCNCNCTT TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 344515 [Map]; Strand: w
      • AT2G01800.2 - [+] show detail - COP1-interacting protein-related
        Distance: 0; Region: exon4 (CDS)
      • AT2G01800.1 - [+] show detail - COP1-interacting protein-related
        Distance: 0; Region: exon4 (CDS)
      • AT2G01800.3 - [+] show detail - COP1-interacting protein-related
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-1893-1 - 3-prime edge 
    GTGGTGAGGG AAATGTCACT AAGATGGGAG AGAATCAGCA TATTTGTGAT 
    GCAGATCAAG AGGGACCTGT CAATGGTCAT ACCATTGATG TTGAGGTCAA 
    GCT

AT2G01800.1

Model type
Protein coding
Short Description
COP1-interacting protein-related
Computational Description
COP1-interacting protein-related; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT4G00580.1); Has 777 Blast hits to 692 proteins in 155 species: Archae - 4; Bacteria - 61; Metazoa - 249; Fungi - 76; Plants - 111; Viruses - 5; Other Eukaryotes - 271 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01800.2

Model type
Protein coding
Short Description
COP1-interacting protein-related
Computational Description
COP1-interacting protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT4G00580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01800.3

Model type
Protein coding
Short Description
COP1-interacting protein-related
Computational Description
COP1-interacting protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT4G00580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR