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54-1939-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9505447 [Map]; Strand: w
      • AT4G16890.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class), putative
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1939-1 - 5-prime edge 
    CGGTCGAGTG CCTTGAGAAG ATGGCTGAGG AACGATTTTC GGACATCATC 
    TCCACGGAAG CTCGCAAAAA CATCGTATCT CTGGCTAGTA GAAGAAGAAT 
    TTGTTTCGAT CTCATCATCT TTGGATGTAT CCATCATTTT GCGGTCAAGC 
    TCCTTGACAA GATGGCTATT AAACAATTTG CAGAAAACGT TGTATATCCA 
    TCCGAAAACT TTGTATATCC ATCTGAAGGA CGACGACGCC ATGGAAGAGG 
    ATGAGAGAGA AGAGACGAAA ATTCTCAAGC GAAAGCACTT TGAGGTACAT 
    CAGTAATTCA ACACAATGAT AAAGAGGATA AACTTGGTCT TCCTTTACTC 
    GAAGCTAGCA TAGAAGACTT GTTCTTTTTT TTTTTTGGNN NAANCNNNAA 
    AAAANTNNTN AAAAANTTTN TTTNNGGGGT AAANGNAAAN CCCCNTNCCN 
    NNAAAAANNT TTNGGTNCCA AAACNTCCCC NNCCNTTTTT TTGGGGGAAT 
    CNANTNTNCC CCCCCANGGN GGGAAAAGGT CCCCCNNCTT TNCCNAAANA 
    ATTTTTTTTT TTTTTGGGNN GGGCNNGGGG NNNAGGAACC CGGGGNGACT 
    TTTGNNAAAA NGGGAAAAAA ATTTTAAGGG CTTTAANGGG TNAAACTTTC 
    CCCCCNAANN AAAAGGGGGG GAATTTTTTT TTTTAAANAA AAAN

AT4G16890.1

Model type
Protein coding
Short Description
disease resistance protein (TIR-NBS-LRR class), putative
Curator Summary
Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.
Computational Description
SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 (SNC1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to auxin stimulus, defense response to bacterium, incompatible interaction, defense response, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 42615 Blast hits to 22768 proteins in 878 species: Archae - 40; Bacteria - 3631; Metazoa - 4485; Fungi - 289; Plants - 31985; Viruses - 14; Other Eukaryotes - 2171 (source: NCBI BLink).
Link
InterPro Scan - TAIR