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54-1963-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18217416 [Map]; Strand: w
      • AT4G39090.1 - [+] show detail - Papain family cysteine protease
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-1963-1 - 5-prime edge 
    GAAGGAAGCA GAGAAGGATT AATATAGATA GAACCCTCAG TAGATTATCA 
    ATCACACGCA ACGTGAATGT ATAGGTGTAT GTATAGGTCT CTGCTACACA 
    GTCTTTTTCC CTTTGGAGAT TAGCNTTTCG GTTTCTTTTA AGATAATTTT 
    AAAAGATATT GTTGTCATCA TTATTATAGT CGGAGAAAAA ATCGGAAGAT 
    ATTTATGGTA TTTATTATTA TTTTAAGATG CCTTATCCAA GGGGAAAGGA 
    GAGAGTTAAC CAATGATGTA GAACCACGTG TTAATCATTG AATGGGTATG 
    GAGTAATGGA ATGGGATAGG TTCAACTTGT TGTTAGCAGT GCCGTGTTGT 
    CTTGGATAAT ATTAATTCTC TCTTTTCTAA AAACTTTAAA AAATAGTTCT 
    ATCATCCTCT TTTTCTGAGA CAAATGTAGA AGCTCATGAT CGGTAGTTGC 
    CATGTTTCTC TTCTCTGATT CATTTATTTA TGTTCCCAGT GTACTAAAAA 
    TAATTTGTAA TGTAATTTTA TTGATTTTTA GTGTACCTCC TGGTTTTTGG 
    CTGAACTTTG AACCAAATTA TGAAGACACG ATGATCAAAT ATGTCTCTTT 
    GAATATGCGT TTTAGAATTA ATAAAGAATG AAAAACTAAT AAAGAATGAA 
    GGGTTTCTAG AGTTCACAAT GAAAACAAAC AAATAAGGAA CCACACTCTC 
    TTTGTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18217300 [Map]; Strand: w
      • AT4G39090.1 - [+] show detail - Papain family cysteine protease
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-1963-1 - 3-prime edge 
    CTTCCTTCAA TCTAATTGCA AATCAAATGG ATCGTCTTAA GCT

AT4G39090.1

Model type
Protein coding
Short Description
Papain family cysteine protease
Curator Summary
Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Required for RRS1-R mediated resistance against Ralstonia solanacearum. Interacts with the R. solanacearum type III effector PopP2. RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-R
Computational Description
RESPONSIVE TO DEHYDRATION 19 (RD19); CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Papain family cysteine protease (TAIR:AT2G21430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR