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54-1976-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 361841 [Map]; Strand: w
      • AT4G00860.1 - [+] show detail - Protein of unknown function (DUF1138)
        Distance: -1348; Region: intergenic
      • AT4G00870.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 328; Region: intergenic
    Flanking Genome Sequence: 54-1976-1 - 5-prime edge 
    CTTNGAAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC TAGCTATCAC TGAAGAGTGG TCCTAAATAT 
    TATAGGACAA GCGTGTGTGT GTCTATAATT CCTCCGACTT CTCTATGGTT 
    TTCAAACTAA TATTTCCAAA TGATCAATTC ATGAGTTTTT TTCTGTTAAA 
    ATATATACAA TCTCTACATA TCTATTAAAA TTTTGGACGA TAAAATCTTG 
    AGAACACAAA CTGCACATAT AGATATCAGN TATGTATCTC TCATACCAAA 
    CACGTTTGCG CTTTTAGCGA GCTAGTACGT ANAAGAAATA AAGTACAGAA 
    AGTAGCACAT AAATTACTCG TATACGTATC AACGAGATCA AACGTTTGAT 
    AAAACAACAT TAAACGCTAG AAGGAATTNG ATTTTTCTAG NACTCATGAA 
    ATAAAACATA NGGTCGCAAA AAAAACAAAA ATTATTNGNG CATCCTATGT 
    NGACGTCANA ANACAAACAN ATGGTNGTNG GCTNANGGAA NNNACAAGTG 
    TGGGGCTAAG GGTATCNACN AATNTNGNNC CTTNTGGATC CNAAACAACA 
    AAATCTTGNN GGANAACCAG ACNNAAGCGC TGNNGCNNTN ACNTGTTGTA 
    CACGCCANTC CNTTTCCGNG NGGGNNACAA AAAAATGCNT TCNTTTAGAG 
    GGGNCCCTNT TNNCCGGNCN AAGNGGGGGG NGGNNCCTNT TNTNTNGANN 
    AAAATNNNAA ANGGGGGGGN GCCNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 361856 [Map]; Strand: w
      • AT4G00860.1 - [+] show detail - Protein of unknown function (DUF1138)
        Distance: -1363; Region: intergenic
      • AT4G00870.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 313; Region: intergenic
    Flanking Genome Sequence: 54-1976-1 - 3-prime edge 
    TTTNANTCGG NNGAGGTATT TTANCGACCG TTACCGACCG TTTTCATCCC 
    TGATAGCTAG CTAACACCAA TACTAAAATC AAGTCAATTA CGTAATGAAC 
    TACCAATGCT TTATATTAAT TATTCTTGGA CGTACTGTTA TATTAAGACA 
    CTGATTGGTT AATTTGGGGA AAAAATATTA GTACAATGCA CAGAAAAATA 
    AAGGGTACAA TAATGTTGAG AAAAAAAAGT GGTACAATAA TGCAAAGAGA 
    AGAAAAGGGT ACAATAATGC AATTGAATTG TATCTTTCTT ATTTTGTTTG 
    CTAATTACTA ATTGCAAAAA ATGTTTTTGT GCTTGAAAAA GTAATCATTC 
    TGTATCTAAC ATTCACATAT AAAACAGAAC TAAACAATTT TGCATTTACT 
    TAATGAGACA AAAATGTTTT GTTTTATTTG ATGATCATGG TTTTATGTTT 
    TTCTAAAAGA AATTAAAATA TGTTATGCAA CAAACTATCA TGTGTCTATG 
    TATACATAAC CTATGATACA ATATAGTTTC GACCTTAAGA TTAAGTTTCT 
    TTGACAGAAA GTCAGAAACA GTTATCTTTC ACATGATCCC TTCTTCAATC 
    CTGCTGCAAC GATGTAACGG TTATGCAAAA ATTTACTGAT AGGTAAATCA 
    CATGAAAAAT GGCCACATGC AAAAATTATG CCCGGTTCCA ACTTCTAGGT 
    TAATATGGTA CTCAACAACA AAAAAAAATN TTAACAATAA ATACGTGTTG 
    GGCTTCTTCT TCTTTATANA TGTNTCACT

AT4G00860.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1138)
Curator Summary
putative pathogenesis-related protein whose transcript level is induced in response to ozone and pathogenic Pseudomonas strains.
Computational Description
ATOZI1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to reactive oxygen species, response to bacterium, response to ozone; LOCATED IN: mitochondrion, peroxisome, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1138 (InterPro:IPR009515); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1138) (TAIR:AT1G01170.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00870.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G16430.1); Has 3066 Blast hits to 2737 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 39; Plants - 2956; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR