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54-1979-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6333754 [Map]; Strand: c
      • AT5G18970.1 - [+] show detail - AWPM-19-like family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-1979-1 - 5-prime edge 
    CTTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGAGCTA 
    TTCATGCTGG AGTCGGAGAA ACAGTCGCCT CCGGAGAAAG GCCTCATCTT 
    GGGAGAGTTT GAGTTTCATG ATTCTTCTTA AAAGCGGTTT TACATTTGCT 
    TCAGATCGTG TAATTTGTGT GATGTGTCTT GTGTGTGTTT ATTCTTTTGT 
    TTTGTTTGAT TATTATGATC ATGTAAAATG ATTAGTTGGT GTGAAGAAAA 
    AAAGAAAAGA GATNGATAAT AATATTACAC ATNACATTCT TTGCAACAAC 
    TTAACATCAA ACGATTTGAT ACTCTAAACA TGAACTGCGA TCTTCCCCGC 
    CCACTCCCGA AATNACNNAA NCCTACNCCT TATCANTATA NCACTTTCTC 
    ANATCCTATG GAACAAGCAT CATAAACAAN CNCGCNGNAC AACNAACATG 
    TCNCCGGNAG CGTNNACNTT ACATTGATNA NGANNNCTTN NGAACNNCAN 
    GTGACCACAT TTCGTNGGGN ACNCCNATNA CCACATNNCN TCNCNCCNTN 
    CCACCCNNNN NNGNTTNAGT ANTAANATTT NTTNNACAAA GGNTTTTATC 
    TTNTTCNNGG GGAAAANNNA TTTTTNTTTT CTTCNNGGGG GGGAANAACA 
    NTCTCCCTCC CNTAATNNNT CNCNCCNNTT TTTTNTTTTT NTTTTCTNCC 
    CNNATANNNN TCANCACTTN TTNAAAACNT NNGGGGGGAA TTTTTTTTCT 
    NNATANCCCA NNAAAAAAAT ATNTTTCTTN C

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6337748 [Map]; Strand: c
      • AT5G18980.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-1979-1 - 3-prime edge 
    GATTAAACAA AACCGAANAA GTTTACAAGT ATTTGATAGG AACTTTAAAT 
    TGAGATACTA TTCATTTTAA TCTTAAGAAA TATGAAGAGG ACGATATTAA 
    GTGAAAATGT AGAAGCATTG ATTAAAAGTT TTCAAGAAAA TCTAATTGAA 
    ATGAAAAACA GTTTAGAGAC AAAGTAAGAA ATTAATGTGA TAAAAACCTG 
    TAAACGAATG CTTCGATCTT CGTCTTCTTC GAACTTTCTT GAATCCATTA 
    TGAACCTTTT GTTGTGTTTA CTCGTTTCCT ACTCAAACCG TAATCGAAAA 
    TTTCACTTTT TCGATCTTTC TTTCTTTCTT TTTTAGTTTT TGAATAGTGC 
    GTAATGACTT GAGGAGTTGT TGATGATGCA GAGAAAACGA GTAAAGCGTG 
    ATTTTACATT CTTTCTATGA ACATATGGAT GTGTGTATAT ATATAGAGAG 
    AGATAGAGAA NAGAGAGGAG AGATAGGGAA GCANAATTTG GCANAGGAGT 
    GGAGAGAAAG TCTGCCNATA ATNCTAAATA ACGCAAGAGG AAATGTGCAA 
    GANNGTGTNA CTTTGAGATT ATTGTTGTAT ATCATGTATG CTTTCATNAA 
    GCAATTTTAT NACCAAAGNT ACATGTGNNA CCAGCCACTA AAAANNGAAA 
    GAAAAAAAAA ACTANTTTTG GGACNTNNTN CACCCTTTTT TNTTAATCTT 
    TTTTTTTTTT TCCCNTAAAA AAAGNNA

AT5G18970.1

Model type
Protein coding
Short Description
AWPM-19-like family protein
Computational Description
AWPM-19-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like family protein (TAIR:AT5G46530.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G18980.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G06210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR