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Mutant Lines
54-1980-1

54-1980-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 3470721 [Map]; Strand: c
- AT5G10970.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
  Distance: 635; Region: intergenic
- AT5G10980.1 - [+] show detail - Histone superfamily protein
  Distance: 1684; Region: intergenic

GTTGTTTGTA CATTCTATTT ATGTATATTT AGGTAGTGCA TATAGATTCA 
TTCTAAAGGC CAAAGACTAG TCACTCTTTG TCTAGTGTAC ACAAATTTCG 
GGGTCTCACA AAGATTTCAT TGGATTCTTG ATTATTTCAT GATTTGTTAT 
TAGCTGCATT ATTAGGATCA TATGATGTAT TAATTATGTT TTTTCTTCTG 
GACTCTTTGT TTCTTGTCAT CATCACAACT AACAAGTTCT TATTTTATAT 
TTGTTTTGCT TTCTTTGTGT GTCTTCTTAA CTACTTTTCA ATAAAAGAAT 
GTTTTTCTTA CTTTTAGGTT TCGCAACTCT GACTTTACAA TAAGTCTTTT 
TTCTGGTTTC CATGACAACA AATCTTCCCA TATATCTCAA GATAATCTCT 
TTCTTTCATA CACTAAAAAG TTTCACTTCG TTTCTAGGAA CTTCACTATC 
TCTTTTATGG TTGTTGGGTG TATACAGAAA TCCATTGATG TCTACCTTAA 
AACCTCAAAC TTGTAGAAGT GTGAAAGTTG TACATCATAA ATCTATGGTA 
GAAAATATAC TCACAAGATT ACTAACCCTT TAATAATACT GGTGTAGACA 
TCAATGACAA CAAAAAACCA GCACAAAGAA AAGAAAGCTT CTTCTCGCTT 
CTCAAAGCT

3 prime edge [+] show sequence

Chromosome: 5; Position: 3470876 [Map]; Strand: c
- AT5G10970.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
  Distance: 790; Region: intergenic
- AT5G10980.1 - [+] show detail - Histone superfamily protein
  Distance: 1529; Region: intergenic

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCACATA 
ATTCTAATGG ACTTGACTCC AACTCTACAC ATCTTGAGAT GACAAACATC 
AAAACTGTTT CATGAGCTTT CACAGAGAAC GAAGTTTCAG TGTTTCAAAT 
ATTTAAGAAA ACACATGATT GTGAACAGGT TTATGAATAC TAGCAGGCAA 
AGATATTATG GCCAACCTGA ATTTACCATT GTGCTCTATC ACTAAAGGGC 
AACATAGAAG CCAAAATAAC TCATAGATTG ATAAAGAAAT ATAAATATTT 
GACACAGTTA CACTCAACAC CAAACGTTGG ACAATACCAA ATGTTGGCAT 
ATGAATCTGA ATATACAGAT TATCAAACTC CTCACCTAGA ATCAAAGTAG 
AAGTATGTAC ACTTTCTTCC CAGTAAACAT ATAAGGCACA AGACAGATCA 
TCATGTTTGT TTTCAGATAC AAAATTGGCC ACAAACAACC AAAAAAGGAA 
TGAAAACACA CCTTAATGAA TAAAACAAAG AAGAAACACC AAGGCAGACA 
ATAACACATG TGGAATAAAA ATCTAGTGAA CCCAAACCTC ATTGATTAGC 
TCTTGGGTCC ATTTTTCATC TACTTGTATA TATACCACAA TTCTGACCCC 
ATCAATACTC TTCAATCTCA GTCACACTTT CCTGAAACAC ACAGCAAGAA 
AAAAAAGATA TTGATGGATC AGTATCAGGT TGCTACCAAA TTACATCCAC 
ATGTCAGCAG ATTAATAGA

AT5G10970.1

Model type: Protein coding
Short Description: C2H2 and C2HC zinc fingers superfamily protein
Computational Description: C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 3 (TAIR:AT5G25160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G10980.1

Model type: Protein coding
Short Description: Histone superfamily protein
Computational Description: Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR